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clinvar-streams
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Add graceful shutdown hook to clinvar-raw producer
#36
theferrit32
closed
3 years ago
1
Add graceful shutdown hook to clinvar-raw producer
#46
theferrit32
closed
3 years ago
0
Change db atom to mount state
#35
theferrit32
closed
2 years ago
1
Implement pre shutdown hook to combiner to gracefully save kafka and local db state for combiner
#34
theferrit32
closed
3 years ago
1
Delete extracted testdata
#33
theferrit32
closed
3 years ago
0
Cloudbuild caching and parameterization of db location
#32
theferrit32
closed
3 years ago
3
Add snapshot and resume-from-snapshot functionality
#31
theferrit32
closed
3 years ago
1
Provide ability to log in a format interpretable by stackdriver/google-monitoring
#30
theferrit32
opened
3 years ago
1
Parameterize database location
#28
theferrit32
closed
3 years ago
1
Set up automated deployment of clinvar raw and combiner to stage cluster
#27
theferrit32
closed
3 years ago
1
Expand unit tests and error handling in `clinvar-raw` stream producer
#45
theferrit32
closed
1 year ago
2
Structure compound variants
#26
theferrit32
closed
3 years ago
0
Remove 'empty' values from output combiner messages
#25
theferrit32
closed
2 years ago
1
Implement deeper schema checks on combiner output messages
#24
theferrit32
closed
2 years ago
1
Combine top level assertion trait set into assertion message
#23
theferrit32
closed
3 years ago
0
Implement strategy for preventing message loss and preventing message duplication
#22
theferrit32
closed
3 years ago
3
Clean up record metadata fields, release dates, record deletions
#21
theferrit32
closed
3 years ago
2
Remove deleted sub-records from combined clinical assertions
#20
theferrit32
closed
3 years ago
1
Gene associations
#19
theferrit32
closed
3 years ago
2
Investigate connection from Confluent to AWS Lambda
#18
larrybabb
closed
2 years ago
3
Combine gene association records into variation records
#17
theferrit32
closed
3 years ago
2
Move clinvar-combiner sql from inline code to separate files in subdirectory
#16
theferrit32
closed
2 years ago
1
Update spec definitions and capture+propagate in clinvar-combiner
#15
theferrit32
opened
3 years ago
2
Filter out unreferenced gene and submitter data in test data output
#14
theferrit32
closed
3 years ago
0
Repeated records are produced due to incorrect record filtering
#13
theferrit32
closed
3 years ago
0
Enhance pipeline to auto-classify into Classification Context bins defined by ClinGen
#12
larrybabb
closed
3 years ago
1
Add Allele Origin and Collection Method data to GraphQL SCV results
#11
larrybabb
closed
3 years ago
3
Mark flushed records as clean
#10
theferrit32
closed
3 years ago
0
Structure compound variants and implement linked flushing as happens for clinical assertion variation
#9
theferrit32
closed
3 years ago
1
Resolve issue with observation traits
#8
theferrit32
closed
3 years ago
0
Investigate connection from observations to traitsets
#7
theferrit32
closed
3 years ago
0
Resolve #5 add deleted flag when event type is delete
#6
theferrit32
closed
3 years ago
0
Add deleted field to output objects if event_type is delete
#5
theferrit32
closed
3 years ago
0
Remove combiner metadata fields from output clinical_assertions and set release_date to latest
#4
theferrit32
closed
3 years ago
3
Convert flat assertion variant list into tree structure in clinvar-combiner
#3
theferrit32
closed
3 years ago
6
Combiner refactor
#2
theferrit32
closed
3 years ago
0
Attach precise release timestamp to kafka messages
#1
theferrit32
opened
3 years ago
4
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