Guided Auto Encoder and Immune Age

Code and data for guided auto encoder and immunology data analysis.

This is a python package that is distributed with the aim on ensuring reproducibility. The code was designed and tested to work specifically with the data in the package.

Main scripts

1. Figures and toy examples for Guided Auto Encoder:

gae_toy.py

2. Cross-validation experiment on GAE and Extraction of Immune Age:

gae_immuneAge.py

3. Analysis of features' distributions in immune data:

immune_feature_distribution.py

4. Immunology monotype identifcation:

immune_type.py

5. Immunology Gene expression analysis:

immune_gene_analysis.py

Referencing

Please reference this repository's URL if using the code.

Copyright & license

(C) Copyright 2017 Tianxiang Gao

This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program.  If not, see <http://www.gnu.org/licenses/>.