cellchat.R - CellChat anaylsis of CTRL vs AVM
avm_ec_rna_velo.ipynb - RNA velocity analysis for the AVM EC from multiple samples
build.py - script to create the scanpy object for scVelo analysis from a Seurat object
seuratToAnnDataCombined.R - script to call build.py from R to create a scanpy object from a Seurat object
spatial_analysis.ipynb - Spatial analysis of osmFISH data
FinalReport_PerCellAnalysis.csv - Spot table with position information