Add Eyal et al 2018 to Live Papers

cnr-ibf-pa / hbp-bsp-issues

Ticketing system for developers/testers and power users of the Brain Simulation Platform of the Human Brain Project

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Add Eyal et al 2018 to Live Papers #420

Closed lbologna closed 5 years ago

lbologna commented 5 years ago

Live Paper page update

Aspect	Detail
Summary	Add Live Paper for Eyal et al 2018 in the BSP Live Paper
Expert	@lbologna
Deadline	M12
Dependencies	None

List of additional/changed features

Add a new Live Paper document for Eyal et al 2018 to the BSP Live Paper page

Tasks

[x] Add document
[x] Create collab for the new Live Paper
[x] Check that all links work

Acceptance Criteria

All links in the live paper work and all images and animation are correctly visualized

lbologna commented 5 years ago

The new Live Paper document for Eyal et al 2018 has been added to the Live Paper page. All links seem to work.

@alex4200 could you please perform a final check and let me know if something does not work correctly? Thank you

genric commented 5 years ago

@lbologna, Alex is on vacation this week.

genric commented 5 years ago

I've checked the links:

The link for the first Cell_130303 is broken for the BlueNaaS. It looks weird because under the same name the link in model catalog points to: cell1303_03_model_448.zip and for the BlueNaaS it is: cell1303_03_model_643.zip(which doesn't exist in the storage container)

Cell_130305 looks also broken: there is hoc error.

could not open morphology/2013_03_13_cell05_675_H42_04.asc
NEURON: morphology/2013_03_13_cell05_675_H42_04.asc :file is not open

orena1 commented 5 years ago

I'll check it now, thanks

orena1 commented 5 years ago

The link for the first Cell_130303 is broken for the BlueNaaS. It looks weird because under the same name the link in model catalog points to: cell1303_03_model_448.zip and for the BlueNaaS it is: cell1303_03_model_643.zip(which doesn't exist in the storage container)

Fixed with this: https://github.com/HumanBrainProject/hbp-bsp-live-papers/pull/5

Cell_130305 looks also broken: there is hoc error.

I'm not sure why we get an error, it works in my computer, also I can not see the error message in the chrome console.

genric commented 5 years ago

Cell_130305 looks also broken: there is hoc error.

The issue there is the morphology file extension. It has lowercase asc in the hoc template and the actual file extension is all caps: 2013_03_13_cell05_675_H42_04.ASC(I guess if you are on Windows then this doesn't make a difference). And the error message is a bit too generic, I agree. Will try to improve it.

orena1 commented 5 years ago

Thanks @genric nice catch, I've fixed it now (Using Mac)

genric commented 5 years ago

Looks like all links are working now.

alex4200 commented 5 years ago

Retested it, seems to work.