Add folder/file check on uploaded optimization .zip file in hhnb

[lbologna]

Use Case Update

Aspect	Detail
Summary	Perform a check on the files and folders contained in the optimization .zip file uploaded by the user in the hhnb workflow
Expert	@lbologna
Deadline	M18
Dependencies	None

List of additional/changed features

This update will be quasi-transparent for the user, in that this check will be performed in the backend, once the file is uploaded. Both in an unsuccessful (a problem arises) and successfull (the .zip file is well formatted) case, a message box will notify the user.

Tasks

• [ ] Add check on .zip file in the backend
• [ ] Add message box in the frontend
• [ ] Add an image or an info box on how the .zip file should be structured

Acceptance Criteria

The user is notified after the .zip file is uploaded for both well formatted and badly formatted files.

[lbologna]

Hello, the points in the list reported below are now verified when a model .zip file is uploaded by the user. For testing purposes, I prepared an set of sample .zip files for which the verification should give negative results (+ one 'good' example). Here's the link to the google drive folder: https://drive.google.com/drive/folders/1gCA7Pi7NsR5Rok9mbaQO64m77FaoeeaC?usp=sharing

@alex4200 could you please check and let me know if something is not working properly? Here's the link to the "dev" app: https://collab.humanbrainproject.eu/#/collab/1256/nav/29703 Thank you.

=========================== 1) the model .zip file must contain a folder having its same name (e.g. 'test.zip' must contain a model folder named 'test')

2) the model (unzipped) folder must contain the following subfolders: "config", "checkpoints", "figures", "mechanisms", "model", "morphology", "tools" and files "opt_neuron.py" and "init.py""

3) folder 'config' must contain fles "features.json", "morph.json", "parameters.json", "protocols.json" and they all must contain a dictionary with one key-value pair. The key must be the same for all the .json files.

4) line 75 in file 'opt_neuron.py' must contain the same key of the .json files described in point 3)

5) folder 'mechanisms' must contain only .mod files and must not be empty

6) folder 'model' must contain files: "init.py", "analysis.py", "evaluator.py", "template.py"

7) folder 'tools' must contain files: "get_stats.py", "task_stats.py"

8) folder 'morphology' must contain only one file

9) the files contained in folder 'morphology' must have the same name as the key in file "morph.json" in the 'config' folder

[alex4200]

@lbologna The test of the new check were fine in DEV. I suggest you update the application in production. Then I do a final test.

[lbologna]

@alex4200 production updated. Thanks.

[alex4200]

Tested in prod, ticket closed