Use cases run successfully for the following use cases:
Single Cell Model / Optimize a striatal fast-spiking interneuron
Circuit Building / Striatum microcircuitry
Actual Behavior (please include screenshot if possible)
neuron import error:
ExceptionTraceback (most recent call last)
in ()
----> 1 simulator = ephys.simulators.NrnSimulator()
/opt/conda/envs/python2/lib/python2.7/site-packages/bluepyopt/ephys/simulators.pyc in __init__(self, dt, cvode_active, cvode_minstep, random123_globalindex)
30 self.banner_disabled = False
31
---> 32 self.neuron.h.load_file('stdrun.hoc')
33
34 self.dt = dt if dt is not None else self.neuron.h.dt
/opt/conda/envs/python2/lib/python2.7/site-packages/bluepyopt/ephys/simulators.pyc in neuron(self)
86
87 if self.disable_banner and not self.banner_disabled:
---> 88 NrnSimulator._nrn_disable_banner()
89 self.banner_disabled = True
90
/opt/conda/envs/python2/lib/python2.7/site-packages/bluepyopt/ephys/simulators.pyc in _nrn_disable_banner()
72 raise Exception(
73 'hoc shared library not found in %s' %
---> 74 nrnpy_path)
75
76 hoc_so = hoc_so_list[0]
Exception: hoc shared library not found in /home/jovyan/.local/nrn/lib/python/neuron
### Steps to reproduce the problem
Run with fresh container.
### Optional infrastructural data (user, platform, browser, environment, ...)
User 'alextestuser003'.
Expected behavior
Use cases run successfully for the following use cases:
Actual Behavior (please include screenshot if possible)
neuron import error:
ExceptionTraceback (most recent call last)