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cnr-ibf-pa / hbp-bsp-issues

Ticketing system for developers/testers and power users of the Brain Simulation Platform of the Human Brain Project
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Redeploy new stack on PizDaint after the maintenance on 16th of March 2021 #556

Closed clupascu closed 3 years ago

clupascu commented 3 years ago

Expected behavior

loading modules without problems

Actual Behavior (please include screenshot if possible)

module load daint-mc cray-python/3.8.2.1 PyExtensions/python3-CrayGNU-20.08 module load intel/19.0.1.144 module use /apps/hbp/ich002/hbp-spack-deployments/softwares/27-10-2020/install/modules/tcl/cray-cnl7-haswell module load neuron/7.9.0a module load py-bluepyopt

after loading the modules above I get

PyExtensions(45):ERROR:105: Unable to locate a modulefile for 'PyExtensions/python3-CrayGNU-20.08' cray-mpich/7.7.15(9):ERROR:150: Module 'cray-mpich/7.7.15' conflicts with the currently loaded module(s) 'cray-mpich/7.7.16' cray-mpich/7.7.15(9):ERROR:102: Tcl command execution failed: conflict cray-mpich

Steps to reproduce the problem

On PizDaint module load daint-mc cray-python/3.8.2.1 PyExtensions/python3-CrayGNU-20.08 module load intel/19.0.1.144 module use /apps/hbp/ich002/hbp-spack-deployments/softwares/27-10-2020/install/modules/tcl/cray-cnl7-haswell module load neuron/7.9.0a module load py-bluepyopt

Optional infrastructural data (user, platform, browser, environment, ...)

PizDaint

antonelepfl commented 3 years ago

Hi Carmen, HPC have deployed the latest version of the software stack on 12-02-2021 instructions. (see Run a simulation with small circuit target) Do you need a specific version of some software or the latest should be fine?

clupascu commented 3 years ago

Hi Stefano,

I get the same results even when I load the modules as suggested in the instructions that you linked.

module load daint-mc cray-python/3.8.2.1 PyExtensions/python3-CrayGNU-20.08 module load intel/19.0.1.144 module use /apps/hbp/ich002/hbp-spack-deployments/softwares/27-10-2020/install/modules/tcl/cray-cnl7-haswell module load neuron/8.0a module load py-bluepyopt

I do not need any specific version, just the latest working one.

Thank you for your reply.

antonelepfl commented 3 years ago

Yes so, apparently the module PyExtensions/python3-CrayGNU-20.08 has been replaced by PyExtensions/python3-CrayGNU-20.11

clupascu commented 3 years ago

Still get

cray-mpich/7.7.15(9):ERROR:150: Module 'cray-mpich/7.7.15' conflicts with the currently loaded module(s) 'cray-mpich/7.7.16' cray-mpich/7.7.15(9):ERROR:102: Tcl command execution failed: conflict cray-mpich

when I do module load py-bluepyopt

jorblancoa commented 3 years ago

Hi @clupascu

As @antonelepfl mentioned they updated the PyExtensions module. Regarding cray-mpich issue, they also changed the default version of mpich to 7.7.16 which is loaded by default. That is why it conflicts when trying to load the previous version. This has been fixed in the latest version of the software stack on 12-02-2021. I also updated the instructions accordingly.

Let me know if you have any other issues! Jorge

clupascu commented 3 years ago

Hi @jorblancoa,

yes. But it seems in a new ssh session just doing

module load daint-mc cray-python/3.8.2.1 PyExtensions/python3-CrayGNU-20.11 module load intel/19.0.1.144

module use /apps/hbp/ich002/hbp-spack-deployments/softwares/27-10-2020/install/modules/tcl/cray-cnl7-haswell module load neuron/8.0a module load py-bluepyopt

without doing module purge gives the error. I added module purge too and now it works. Let me run a simulation too and I will then close this issue.

Thank you.

jorblancoa commented 3 years ago

I updated the mpich version in the modules of 12-02-2021 If you want to keep using the modules of 27-10-2020 I could update them also.

jorblancoa commented 3 years ago

I have updated also 27-10-2020 modules, you should be able to run the script without the module purge now

clupascu commented 3 years ago

Everything works fine. I am closing the ticket. Thank you @pramodk @jorblancoa and @antonelepfl