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cogent3
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iqtree2
NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org
GNU General Public License v2.0
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create a new repository cogent3/wrap_c
#29
khiron
opened
11 months ago
0
Create a CLI for the IQTree2 wrapper
#28
khiron
opened
11 months ago
0
Enumerate all main functions in IQtree2
#27
khiron
opened
11 months ago
3
Evaluate pybind11 versus Cython
#26
khiron
opened
11 months ago
2
Automate the Build Process for C++ Library and Python Bindings
#25
khiron
opened
11 months ago
0
Develop Python Wrappers for IQTree2 as a Library
#24
khiron
opened
11 months ago
0
Implement Python Bindings for a C++ Library
#23
khiron
opened
11 months ago
0
Identify the minimum requirements for automating IQTree2
#22
khiron
opened
11 months ago
1
Evaluate and Choose a Tool for Creating Python Bindings
#21
khiron
opened
11 months ago
1
Convert IQTree2 C++ Code into a Library for Cross-Platform Compatibility
#20
khiron
opened
11 months ago
0
Docker
#19
khiron
closed
1 year ago
0
Test confirguration
#18
khiron
closed
11 months ago
0
Document the process of setting up and running tests
#17
khiron
closed
11 months ago
0
Instrument CyrusEmber tests to generate test parameters
#16
khiron
closed
11 months ago
0
Add cogent3[tests] to requirements.txt in /tests
#15
khiron
closed
11 months ago
0
Create a pytest fixture in the iqtree2/tests directory to provide core testing services
#14
khiron
closed
11 months ago
0
Create test_iqtree2_baseline as a model test for iqtree2 specific functionality
#13
khiron
closed
11 months ago
0
Construct a minimal sample sequence alignment between 3 taxa using cogent3
#12
khiron
closed
11 months ago
0
Create representative test comparing iqtree1 results with iqtree2
#11
khiron
closed
11 months ago
0
create test_fixed_tree.py
#10
khiron
closed
11 months ago
1
freeze representative sample results from iqtree1
#9
khiron
closed
11 months ago
0
create tests directory
#8
khiron
closed
11 months ago
0
Create docker container for development
#7
khiron
closed
11 months ago
0
refactor tests using pytest and generating the iqtree yml files
#6
khiron
closed
11 months ago
0
Simplify the .yml files for GHA (github actions)
#5
khiron
closed
11 months ago
0
Remove emailing
#4
khiron
closed
11 months ago
0
Update python to 3.11
#3
khiron
closed
11 months ago
0
Implement CI
#2
khiron
closed
11 months ago
1
Merge .gitignore with standardised versions
#1
khiron
closed
11 months ago
0