Python pipeline for neuroimaging data. Documentation at https://clpipe.readthedocs.io/en/latest/index.html
If you run into issues, find bugs, or have feature requests, please create an issue in this repository. If you have longer questions about the pipeline, or specific questions about the design choices, please get in contact with the creator of this pipeline, Teague Henry (ycp6wm@virginia.edu)
If you use clpipe to process data for a publication, please cite the Zenodo repository linked above. A manuscript describing clpipe is being prepared, and once published, will be the citation for the pipeline.
module use /proj/hng/software/modules
module save
module add clpipe
All clpipe commands should now be accessible.
module add python/3.7.14
pip3 install --user --upgrade git+https://github.com/cohenlabUNC/clpipe.git
All necessary dependencies should install to your local Python library, and the console commands should be immediately useable.