colomemaria epiScanpy issues

colomemaria / epiScanpy

Episcanpy: Epigenomics Single Cell Analysis in Python

BSD 3-Clause "New" or "Revised" License

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issues

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Issue with `epi.pp.pca` : Unexpected Argument Error

#139 macelik opened 3 weeks ago
0
epi.ct.bld_mtx_bed drops information from certain threads

#138 smithcathy opened 6 months ago
0
Installation on Mac M2

#137 philmar1 opened 9 months ago
1
change python-igraph to igraph

#136 szhorvat opened 11 months ago
0
Update _bld_atac_mtx.py

#135 idriskb opened 1 year ago
0
Bug in silhouette score calculation

#134 dhananjay-srivastava opened 1 year ago
0
Problems in importing the api after PyPI installation

#133 zvittorio opened 1 year ago
2
Do we have method which can find tf-gene or peak-gene relation?

#132 HelloWorldLTY opened 1 year ago
1
Removing unnecessary import suffixes in api/pl.py

#131 crsct closed 1 year ago
1
Import Error when Importing on Python 3.9

#130 crsct opened 1 year ago
0
fixed type of tss_enrichment_score

#129 crsct closed 1 year ago
1
Type in import of `tss_enrichment_score`

#128 crsct closed 1 year ago
1
Add fns tutorial

#127 DaneseAnna closed 1 year ago
0
Count matrices

#126 HAL9032 closed 1 year ago
0
installation should say python 3.7 else SyntaxError: future feature annotations is not defined

#125 megadesk opened 1 year ago
0
Questions about running time for epi.tl.geneactivity

#124 HelloWorldLTY opened 1 year ago
0
correct parameter typo in silhouette

#123 erguntiryaki closed 1 year ago
0
Error in Generating Methylation Count Matrices

#122 keyingkuang opened 2 years ago
2
episcanpy.tl.silhouette calls sklearn.metrics.silhouette_score with wrong arguments

#121 phobos314 closed 2 years ago
1
Future plans

#120 PauBadiaM opened 2 years ago
0
Update _geneactivity.py

#119 DaneseAnna closed 2 years ago
0
Plans to include other QC parameters for scATAC-seq data?

#117 MinhTran789 opened 2 years ago
0
speed up gene_activity using Intervall tree

#116 rLannes closed 2 years ago
2
Switch epi.pl.cluster_composition for epi.pl.cell_composition

#114 DaneseAnna closed 2 years ago
0
add cell_composition function

#113 DaneseAnna closed 2 years ago
0
Fix bld ct mtx issue

#112 DaneseAnna closed 2 years ago
0
Potential edit required in building count matrix (methylation)

#111 tims68 closed 2 years ago
1
How to generate count matrix in Episcanpy

#110 taopeng1100 opened 2 years ago
0
Error with normalize_total()

#109 sjbegg opened 2 years ago
2
numpy>=1.21.2 requires python >= 3.7 but install docs show python 3.6

#108 james-vincent opened 2 years ago
0
added tss enrichment functions

#107 HAL9032 closed 2 years ago
0
find_genes fn fix for the case of regions not present in the GTF file

#106 HAL9032 closed 2 years ago
0
add patch for chromosomes not found in gtf

#105 mvinyard closed 2 years ago
1
'IndexError: list index out of range' when running epi.tl.geneactivity()

#104 pabloswfly opened 2 years ago
3
In DNA methylation tutorial, the data for matrices construction and secondary processing are not consistant.

#103 qrzhang opened 2 years ago
1
Update load features

#102 DaneseAnna closed 2 years ago
0
Website update

#101 DaneseAnna closed 3 years ago
0
Problems when generating matrix (episcanpy.ct.bld_mtx_fly())

#100 malumbres opened 3 years ago
0
Fix not showing function, comment out unused ones

#99 michalk8 closed 3 years ago
1
fix action workflows

#98 DaneseAnna closed 3 years ago
0
update read_ATAC_10x

#97 DaneseAnna closed 3 years ago
0
Error when loading 10X Cellranger output with read_ATAC_10x()

#96 pabloswfly closed 3 years ago
2
Update _readimpute.py

#95 DaneseAnna closed 3 years ago
0
Update methylation build function

#94 DaneseAnna closed 3 years ago
0
update tutorial enhancer methylation

#93 DaneseAnna closed 3 years ago
0
update tutorial methylation

#92 DaneseAnna closed 3 years ago
0
update save_sparse_mtx

#91 DaneseAnna closed 3 years ago
0
Error running "epi.ct.save_sparse_mtx"

#90 tzhu-bio closed 3 years ago
1
Remove python 2.7 tests

#89 yannikschaelte closed 3 years ago
3
add tutorial to process cell ranger output

#88 DaneseAnna closed 3 years ago
0