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colomemaria
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epiScanpy
Episcanpy: Epigenomics Single Cell Analysis in Python
BSD 3-Clause "New" or "Revised" License
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Update load features
#87
DaneseAnna
closed
3 years ago
0
Update load features functions
#86
DaneseAnna
closed
3 years ago
0
10X compatibility
#85
gaelcge
closed
3 years ago
4
Update _bld_atac_mtx_parallel.py
#84
DaneseAnna
closed
3 years ago
0
About snap2anndata
#83
nigred
opened
3 years ago
0
Update ct.py
#82
DaneseAnna
closed
3 years ago
0
Update test_loading_episcanpy.py
#80
kridsadakorn
closed
3 years ago
0
fix api
#79
DaneseAnna
closed
3 years ago
0
Fixing the design fault of bld_mtx_bed
#78
DaneseAnna
closed
3 years ago
0
import Error
#77
farnoush-shh
closed
3 years ago
2
merge with Test master
#76
kridsadakorn
closed
3 years ago
0
Meet UnicodeDecodeError when utilizing gtf file to produce a gene activity matrix
#75
ddb-qiwang
closed
3 years ago
3
Can episcanpy transform scATAC-seq peak matrix into "Gene activity matrix"?
#74
xuebaliang
closed
3 years ago
1
How are feature groups grouped together (rank_feat_groups_matrixplot)?
#73
hildemann
opened
3 years ago
1
Parallel input
#72
kridsadakorn
closed
3 years ago
0
Fix Scanpy.api
#71
kridsadakorn
closed
3 years ago
0
Error of version 0.2.0+7.g709bba8
#70
kridsadakorn
closed
3 years ago
1
Problem building scATAC-seq count matrice from bams
#69
hildemann
closed
3 years ago
13
Help needed in preprocessing scATAC-seq
#68
alirezaomidi
opened
3 years ago
1
Readthedocs
#67
DaneseAnna
closed
3 years ago
0
snapatac conversion fct
#66
DaneseAnna
closed
3 years ago
0
Small fixes
#65
DaneseAnna
closed
4 years ago
0
Update _load_matrix.py
#64
mvinyard
closed
3 years ago
0
Incompatibility between the old version of Anndata (0.6.22.post1) and the new one
#63
kridsadakorn
closed
3 years ago
1
remove version pinning
#62
le-ander
closed
3 years ago
0
Potential dependency conflicts between episcanpy and scipy
#61
NeolithEra
closed
3 years ago
2
sequence depth issues in algorithms of LSI, LSA, LDA, PCA for dimension reduction
#60
wangmeijiao
closed
3 years ago
1
drastically reduce bld_mtx_fly() peak memory footprint
#59
le-ander
closed
4 years ago
1
Speedup bld atac mtx
#58
le-ander
closed
4 years ago
0
Extremely long runtime bld_mtx_fly()
#57
le-ander
closed
4 years ago
7
build_mtx_fly tabix value error
#56
le-ander
closed
4 years ago
2
build_mtx_fly missing shutil import
#55
le-ander
closed
4 years ago
1
episcanpy does not install / work through any channel of download (conda, pip, git pull)
#54
mvinyard
closed
4 years ago
2
Episcanpy still using scanpy.api
#53
le-ander
closed
3 years ago
1
Episcanpy 0.1.8 should require pysam
#52
le-ander
closed
4 years ago
2
Episcanpy is incompatible with anndata 0.7.1
#51
le-ander
closed
4 years ago
1
Episcanpy is incompatible with scanpy 1.4.5post3
#50
le-ander
opened
4 years ago
1
Add function to load gtf file as features
#49
DaneseAnna
closed
3 years ago
0
Suggestion: add unit testing
#48
kridsadakorn
opened
4 years ago
0
'nb_features' and 'n_features', what is the difference?
#47
kridsadakorn
closed
4 years ago
1
Website update
#46
DaneseAnna
closed
4 years ago
0
Website
#45
DaneseAnna
closed
4 years ago
0
binarize issues
#44
dawe
closed
4 years ago
1
Update _quality_control.py
#43
DaneseAnna
closed
4 years ago
0
Update _quality_control.py
#42
DaneseAnna
closed
4 years ago
0
update comments and remove time
#41
DaneseAnna
closed
4 years ago
0
Update _atac_mtx.py
#40
DaneseAnna
closed
4 years ago
0
Update _quality_control.py
#39
DaneseAnna
closed
4 years ago
0
Anna - addition of new preprocessing and tool functions
#38
DaneseAnna
closed
4 years ago
0
bld_atac_mtx doesn't work with some bam files
#37
kridsadakorn
closed
3 years ago
0
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