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common-workflow-library
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bio-cwl-tools
CWL CommandLineTool descriptions for biology/life-sciences related applications
https://github.com/common-workflow-library/bio-cwl-tools#readme
Apache License 2.0
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copy over `Phenomenal` tools
#157
mr-c
opened
1 month ago
0
Output in Kallisto-quant not working
#156
Brilator
opened
5 months ago
3
newer subread
#155
mr-c
closed
7 months ago
1
old containers neeed updating
#154
mr-c
opened
7 months ago
1
identifiers cleanup
#153
mr-c
closed
1 year ago
0
start of iqtree
#152
mr-c
closed
1 year ago
1
megahit
#151
mr-c
closed
1 year ago
0
register these tool descriptions at bio.tool
#150
mr-c
opened
1 year ago
1
Add "intent" fields with EDAM Operation values where possible
#149
mr-c
opened
1 year ago
0
changed path in the README.md
#148
zmahnoor14
closed
1 year ago
0
switch to GitHub Actions from Travis CI
#147
mr-c
closed
1 year ago
0
metfrag and sirius CWL files from MAW
#146
zmahnoor14
closed
1 year ago
0
new "stable" schema.org stable RDF URL
#145
mr-c
closed
1 year ago
0
edam terms are HTTP not HTTPS
#144
mr-c
closed
2 years ago
0
"Added some tools" redo
#143
mr-c
closed
2 years ago
0
Add BWA-Mem2
#142
mr-c
closed
2 years ago
0
Auto-publish all entries in .dockstore.yml
#141
svonworl
closed
2 years ago
1
Add script to generate .dockstore.yml
#140
svonworl
opened
2 years ago
0
Add .dockstore.yml
#139
svonworl
closed
2 years ago
10
copy resource reqs from Galaxy's TPV
#138
mr-c
opened
2 years ago
0
FastQC: simpler types
#137
mr-c
closed
2 years ago
0
FastQC: use a biocontainer
#136
mr-c
closed
2 years ago
0
EDAM https everywhere
#135
mr-c
closed
2 years ago
0
subread/featureCounts: mapped_reads should have a secondaryFiles entry for the required index
#134
kafeenstra
opened
2 years ago
0
fix remaining http (no 's') for edamontology
#133
kafeenstra
closed
2 years ago
0
star index uses fasta
#132
mr-c
closed
2 years ago
0
initial description of cutadapt
#131
mr-c
closed
2 years ago
0
Add missing InlineJavascriptRequirement
#130
mr-c
closed
2 years ago
0
Correct typo in trim_galore.cwl
#129
douglowe
closed
2 years ago
0
fix input refs in featureCounts.cwl
#128
mr-c
closed
2 years ago
0
add BAM format tag to samtools index
#127
mr-c
closed
2 years ago
0
Added some tools
#126
michael-kotliar
closed
2 years ago
1
featureCounts
#125
mr-c
closed
2 years ago
0
Nextclade update: 0.14.3
#124
pvanheus
closed
3 years ago
0
bwa index: remove need for InlineJavascriptRequirement
#123
mr-c
closed
3 years ago
0
Add TB Profile profile tool
#122
pvanheus
closed
2 years ago
0
Update nextclade to 0.13.0
#121
pvanheus
closed
3 years ago
0
Update schema.org URL
#120
mr-c
closed
3 years ago
0
optimizations branch is no more
#119
mr-c
closed
3 years ago
4
Consider supporting Top 100 packages in Bio-conda
#118
swzCuroverse
opened
3 years ago
0
Fix typos and other errors in the STAR tool wrappers
#117
tetron
closed
3 years ago
0
Update nextclade to 0.11.2
#116
pvanheus
closed
3 years ago
0
Update nextclade to 0.11.1
#115
pvanheus
closed
3 years ago
0
Add RSEM
#114
golharam
closed
3 years ago
1
Add snp-sites tool
#113
pvanheus
closed
2 years ago
1
Add tool for mafft
#112
pvanheus
closed
3 years ago
0
mafft tool
#111
pvanheus
closed
3 years ago
0
Make ci.py messages clearer
#110
pvanheus
closed
3 years ago
0
Add tools for grep and awk
#109
pvanheus
closed
3 years ago
0
Additional notes for contributors
#108
pvanheus
closed
3 years ago
0
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