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compomics
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peptide-shaker
Interpretation of proteomics identification results
http://compomics.github.io/projects/peptide-shaker.html
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Can filtered results be loaded into PeptideShaker?
#441
danielgeiszler
closed
3 years ago
2
Reports: Algorithm score
#439
tivdnbos
closed
3 years ago
2
Reports: adding multiple proteins to comma separated file
#440
tivdnbos
opened
3 years ago
3
String index out of range issue
#438
jcanderan
closed
3 years ago
2
Poor PTM localization scores reported where a clear ion ladder is present
#437
Kabir12321
closed
1 year ago
6
PeptideShaker 2.0.9 import failes (Cannot invoke ... because "spectrumMatch" is null)
#436
TjorvenH
closed
3 years ago
10
custom export
#435
hale94
closed
3 years ago
4
Use local FDR instead of global
#434
iquasere
closed
3 years ago
2
Project reference not specified.
#433
iquasere
closed
3 years ago
1
The spectrum files are not present in zip file
#432
umutcakir
closed
3 years ago
5
No identification results
#431
umutcakir
closed
3 years ago
4
Reporter Error while reading the file
#430
InduKhatri
closed
3 years ago
3
Processing issue with new version
#429
fazeliniah
closed
3 years ago
4
Java error in version 2.0.0
#428
chrishuges
opened
3 years ago
25
Peptide shaker error
#426
vipulbatra1985
closed
3 years ago
2
Check all the search engine buttons
#425
vipulbatra1985
closed
3 years ago
1
Feature request: Export coverage % including non-validated
#424
jcanderan
closed
3 years ago
3
Issues exporting sequence coverage?
#423
jcanderan
closed
3 years ago
4
Possible to export species?
#422
jcanderan
closed
3 years ago
2
Peptide shaker error
#421
vipulbatra1985
closed
3 years ago
5
Experimental Design
#420
vipulbatra1985
closed
3 years ago
1
LFQ
#419
vipulbatra1985
closed
3 years ago
6
Bump junit from 3.8.1 to 4.13.1
#418
dependabot[bot]
closed
3 years ago
0
Error while reading *.cpsx file
#417
VladimirRoudko
closed
4 years ago
1
GO analysis empty
#416
drosinis
closed
4 years ago
12
Peptides that match both target and decoy / PEP calculation for spectrum with multiple candidates
#415
CHIA-HENG
closed
4 years ago
4
Gene annotation menu freezes when loading fasta with multiple species
#414
dominik-kopczynski
closed
4 years ago
3
Different validation status for identical PSM in two samples
#413
VladimirRoudko
closed
3 years ago
3
new warning message
#412
fazeliniah
closed
3 years ago
4
Unhandled exception in SearchGUI-4.0.0-beta
#411
VladimirRoudko
closed
4 years ago
4
sporadic error with saving/reading peptide-shaker results upon trying to export the reports.
#410
VladimirRoudko
closed
3 years ago
2
Peptide-shaker does not process DirectTag output
#409
VladimirRoudko
closed
4 years ago
5
PeptideShaker did not manage to map most peptides to the database. Please verify your database.
#408
VladimirRoudko
closed
4 years ago
7
understanding the output of Peptideshaker, command line version
#407
VladimirRoudko
closed
4 years ago
3
Peptide Shaker first use
#406
matty83
closed
4 years ago
2
Difference b/w protein, peptide and PSM FDR?
#404
nattzy94
closed
3 years ago
6
PeptideShaker freezes
#403
CarlaCristinaUranga
closed
3 years ago
2
How to export MS2 quantification on CLI?
#402
nattzy94
closed
4 years ago
6
How to find total number of peptide spectra matches (PSMs)?
#401
nattzy94
closed
4 years ago
5
A plot showing individual search engine results
#400
Hansenlab1
closed
3 years ago
6
Peptide-Shaker errors
#399
Lichun-bio
closed
3 years ago
35
Error while running PeptideShakerGUI
#397
CarlaCristinaUranga
closed
3 years ago
4
Importing Proteome Discoverer 2.4 SP1 mzid files into PeptideShaker
#396
PRprog
closed
4 years ago
7
java.sql.SQLException: Container 3,440 not found.
#395
Jokendo-collab
closed
3 years ago
7
down/up- stream amino acids
#394
fazeliniah
closed
4 years ago
2
Overlap of different search methods
#393
srithegreat
closed
4 years ago
2
Error while running peptide shaker from command line
#392
MohmedSoudy
closed
4 years ago
3
Scaffold and PeptideShaker
#391
MJanech
closed
4 years ago
2
Access is denied
#390
kerenb28
closed
4 years ago
2
custom PTM unavailable
#389
Seb-Leb
closed
4 years ago
4
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