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comprna
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SUPPA
SUPPA: Fast quantification of splicing and differential splicing
MIT License
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Something went wrong with detection of A5 and A3
#151
gouwei1
opened
2 years ago
6
Why this regions were not regarded as RI ?
#150
gouwei1
closed
2 years ago
2
ERROR:lib.tools:['Unexpected number of fields. 3 expected, 2 given']
#149
KH11LLCH1NG
closed
2 years ago
4
Wondering will SUPPA generate different results while using the same file?
#148
LitingKu
closed
2 years ago
1
A problem occur in step 'psiPerEvent'
#147
Tomcxf
opened
2 years ago
13
Definition of Positive and Negative is inconsistent with Fig 3 for 'Right' Alternative Terminal Exon Events
#146
lzx325
opened
2 years ago
0
Encountering errors when trying to process large numbers of samples with SUPPA2 DiffSplice
#145
saipra003
closed
2 years ago
1
DiffSplice significant results have dpsi values of 0
#144
marypiper
closed
1 year ago
5
Problems replicating TRA2 tutorial results
#143
avilaHugo
closed
1 year ago
3
ERROR:psiCalculator:No expression values have been buffered.
#142
emanuelaker
closed
2 years ago
3
diffSplice --lower-bound doesn't work !
#141
ifreeman6
closed
2 years ago
4
error with diffSplice
#140
RyotaKurimoto
closed
2 years ago
10
diffSplice Classic doesn't consider dPSI cutoff
#139
CloXD
closed
1 year ago
1
Covariates in diffSplice (multi-factor design)
#138
adomingues
closed
3 years ago
4
When calculating the cluster, the following prompt appears, and only a 2kb result file is generated. Is this a data problem? Still reporting an error?
#137
ouyang-lang
opened
3 years ago
2
ERROR: suppa.py diffSplice PermissionError
#136
sangmm12
closed
3 years ago
2
hg38
#135
herber4
closed
2 years ago
5
add simple event id
#134
mparker2
closed
3 years ago
8
simplify event ids for cross referencing in genome browser
#133
mparker2
opened
3 years ago
3
Best method for AS analysis on many data sets
#132
herber4
closed
2 years ago
5
Issue with running R script to format tpm file
#131
Fruitflyfeeder
closed
1 year ago
0
Error in diffSplice function
#130
huangwb8
closed
3 years ago
5
Using SUPPA2 with PacBio sequencing
#129
aa9gj
opened
3 years ago
6
Update diff_tools.py
#128
leipzig
closed
3 years ago
0
diffSplice ERROR:__main__:Unknown error: (<class 'UnboundLocalError'>, UnboundLocalError("local variable 'i' referenced before assignment",), <traceback object at 0x7fede986dd48>)
#127
leipzig
closed
3 years ago
5
Problems with diffsplice command
#126
antgomo
closed
1 year ago
21
How to deal with NAs in PSI MAtrix
#125
antgomo
closed
2 years ago
2
Question about -b V option
#124
tonyaseverson
closed
3 years ago
2
UCSC to Understand AS Events
#123
danphillips28
closed
2 years ago
2
AS event-types mentioned in documentation and those supported by code do not match
#122
soumitrakp
closed
3 years ago
2
suppa2 in iso-seq
#121
zhuqingquan5510
closed
3 years ago
2
some questions
#120
Jian288
closed
2 years ago
5
diffSplice Error
#119
katalinvoss
closed
3 years ago
10
memory issue of running DiffSplice
#118
tzcoolman
closed
3 years ago
2
Pool-genes option
#117
marypiper
closed
2 years ago
5
Recommendations for differential testing with sparse data and different sample sizes
#116
fairliereese
closed
1 year ago
3
Split_files by condition issue
#115
sunabcun
closed
3 years ago
1
MultipleFieldSelection.py problem
#114
sunabcun
closed
3 years ago
0
Multiple Comparisons and Clustering
#113
danphillips28
closed
3 years ago
5
ERROR:lib.tools:16862, in line 16863. Skipping line...
#112
chansigit
closed
1 year ago
2
generateEvents empty output
#111
qindan2008
closed
2 years ago
3
Coordinates conversion from rMATS to SUPPA2
#110
JamalEH
closed
3 years ago
1
Replicate samples
#109
nourelislam
closed
4 years ago
0
p-value in the output of diffSplice function
#108
CS791
closed
4 years ago
2
Clustering issue
#107
nourelislam
closed
4 years ago
5
Events counts per junction
#106
areyesq89
closed
4 years ago
3
splitting the file by condition
#105
splicing
closed
4 years ago
3
Issue with Running Differential Analysis
#104
RaymondS1
closed
1 year ago
4
Some questions
#103
stephanflemming
opened
4 years ago
3
Diffsplice failed
#102
ghost
closed
4 years ago
14
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