issues
search
connor-lab
/
ncov2019-artic-nf
A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
GNU Affero General Public License v3.0
89
stars
89
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
update regex search for nanoporeBarcodeDirs
#34
thanhleviet
closed
4 years ago
0
Adding Google Life Sciences API to README.md
#33
mikek498
closed
4 years ago
0
WARN: Process 'ncovIllumina:sequenceAnalysis:writeQCSummaryCSV' cannot be executed by 'google-lifesciences' executor -- Using 'local' executor instead
#32
mikek498
closed
4 years ago
13
Error running articGuppyplex
#31
sthifx
closed
4 years ago
2
Error running Illumina process 'ncovIllumina:sequenceAnalysis:readMapping'
#30
mikek498
closed
4 years ago
2
mandatory parameters in medaka subworkflow
#29
nbargues
closed
4 years ago
2
V3 bed file has incorrect format
#28
thanhleviet
closed
4 years ago
4
--prefix option shouldn't be allowed to contain "/"
#27
m-bull
closed
4 years ago
1
Add QIB profile
#26
thanhleviet
closed
4 years ago
0
Docker build is missing tools in environment.yml
#25
mikek498
closed
3 years ago
0
Added Google Life Sciences config
#24
mikek498
closed
4 years ago
1
Add Sanger config
#23
sb10
closed
4 years ago
5
Adds support for Google Cloud Life Sciences API
#22
mikek498
closed
4 years ago
0
reconcile nextflow profiles
#21
thanhleviet
closed
4 years ago
3
schemeRepoURL can no longer be used with local path
#20
sb10
closed
4 years ago
1
Fix prepareReferenceFiles to work when ref not supplied.
#19
sb10
closed
4 years ago
1
shortcut in qc outcome evaluation for empty fasta
#18
mgcam
closed
4 years ago
0
Maintain changelog and have tags
#17
sb10
opened
4 years ago
2
Allow use of local scheme files
#16
sb10
closed
4 years ago
0
New lsf profile
#15
sb10
closed
4 years ago
0
Add cram input option for illumina workflow
#14
sb10
closed
4 years ago
0
New --cache option
#13
sb10
closed
4 years ago
1
Update environment-illumina.yml
#12
thanhleviet
closed
4 years ago
0
a LEFT primer's name can just contain 'LEFT'
#11
dkj
closed
4 years ago
3
Adding Google Life Sciences API support and Docker container cleanups
#10
mikek498
closed
4 years ago
1
Add guppy_barcoder
#9
iferres
closed
4 years ago
2
Swap gunzip -c for zcat
#8
embatty
closed
4 years ago
1
zcat step fails on OS X
#7
embatty
closed
4 years ago
0
Fixes #5
#6
embatty
closed
4 years ago
0
ivar command line error
#5
embatty
closed
4 years ago
0
Issue3 cramtofastq
#4
JonKeatley112
closed
4 years ago
1
LSF support
#3
roamato
closed
4 years ago
1
Licensing and attribution stuff missing
#2
tcutts
opened
4 years ago
0
Integration with nf-core/nanoseq
#1
drpatelh
closed
4 years ago
4
Previous