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cse6250 / SepsisPrediction

This is the final project of the CSE6250. We mainly use the MIMIC-III data to predict the sepsis.
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Sepsis onset time calculation #1

Open vincentz opened 5 years ago

vincentz commented 5 years ago

Q: How to decide the onset of Sepsis-3? A: Look at the SOFA score 2 days before the suspicious infection time (not exceed the ICU in_time) until 1 day after this infection time (not beyond the ICU out_time), and mark the first timestamp where SOFA increases 2 points as the onset of Sepsis-3.

Q: Where to find the input data? A: sepsis3-df.csv / suspected_infection_time_poe icustays.csv / intime, outtime pivoted_sofa.csv / sofa_24hours (the file is about 500MB and is located here)

vincentz commented 5 years ago

sepsis onset time is updated here in the repo

vincentz commented 5 years ago

There is a very rare situation that pivoted_vital is not continuous for each ICU stay, typically the vital stats inside are mostly NaN.