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ctSkennerton
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minced
Mining CRISPRs in Environmental Datasets
GNU General Public License v3.0
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understanding of the output file！
#41
allen-zhan340
closed
10 months ago
2
I find two CRISPR in genome 'CP069814.1', (23 spacers in CRISPR 1 and 11 spacers in CRISPR 2), I wnder
#40
allen-zhan340
closed
10 months ago
0
The proportion of the genome of strains containing crispers is too small
#39
qianxin-kxy
opened
1 year ago
0
Close the gff file handle.
#38
ctSkennerton
closed
1 year ago
0
java.io.FileNotFoundException: <file_name> (Too many open files) Error
#37
tparket
opened
1 year ago
4
portions of repeats annotated as spacers
#36
acvill
opened
1 year ago
2
minced doesn't find a repeat if it is at the start of the fasta file
#35
Alan-Collins
opened
2 years ago
1
output with no repeat&spacer
#34
1185307269
opened
2 years ago
3
add repeat sequence to database
#33
fabgenomics
closed
2 years ago
4
Java version required for minced?
#32
top334
opened
3 years ago
1
identify the spacer sense strand
#31
YiweiZhu
closed
4 years ago
2
Name and length of sequence is off in the output
#30
Russel88
closed
4 years ago
4
Bump version string
#29
dpryan79
closed
5 years ago
1
wrapper script not honouring JAVA_HOME
#28
tseemann
closed
5 years ago
2
Minced java error
#27
sudeep71
closed
5 years ago
3
Could you please allow for both gff output and minced file output?
#26
oddaud
closed
5 years ago
2
Error processing input file
#25
johnomics
closed
5 years ago
7
High copy number repeats only found with --minNR 2
#24
iimog
closed
5 years ago
2
have you tried compiling minced with newer java or do i need to use 1.8?
#23
Phylloxera
closed
5 years ago
1
Output with too long spacers
#22
Russel88
opened
5 years ago
2
Part of repeat put on spacer sequence
#21
Russel88
closed
3 years ago
3
Add /rpt_type=direct to GFF3 ?
#20
tseemann
closed
6 years ago
1
Exception in thread "main" java.lang.NoClassDefFoundError: IntervalSearchTree$IntervalNode
#19
tseemann
closed
6 years ago
7
Can you compile the jar with -target 1.7 or whatever?
#18
tseemann
closed
6 years ago
2
java error: Exception in thread "main" java.lang.NoClassDefFoundError: IntervalSearchTree$IntervalNode
#17
Ruonan0101
closed
6 years ago
6
Make a 0.2.1 release?
#16
tseemann
closed
6 years ago
1
Fix Makefile, test data and --version
#15
nsoranzo
closed
8 years ago
2
CRISPRDetect: A flexible algorithm to define CRISPR arrays
#14
tseemann
closed
8 years ago
1
Java error
#13
bforde
closed
8 years ago
1
Unsupported major.minor version 52.0
#12
tseemann
closed
8 years ago
2
Up-to-date CHANGES file
#11
fangly
closed
9 years ago
0
minced now in Homebrew
#10
tseemann
closed
9 years ago
1
Option --version not in --help outout
#9
tseemann
closed
9 years ago
3
Sequences with lots of Ns make things run 10x slower
#8
tseemann
closed
9 years ago
3
Need an option to get the version
#7
tseemann
closed
9 years ago
2
How do I run the tests?
#6
tseemann
closed
9 years ago
1
Need to quote PHYS_DIR in minced launcer shell script
#5
tseemann
closed
9 years ago
1
Incorrect GFF location with sequence that is 100% CRISPR
#4
fangly
closed
10 years ago
2
Improved 'minced' shell wrapper
#3
tseemann
closed
10 years ago
0
Inconsistent column 2 in -gffFull output
#2
tseemann
closed
10 years ago
0
Usage issue
#1
tseemann
closed
10 years ago
0