ctb / magsearch

Workflow and config files for searching (very) large public databases with sourmash sketches
GNU Affero General Public License v3.0
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[WIP] fix binary compilation command #1

Closed ctb closed 1 year ago

ctb commented 1 year ago

Attempt to fix build of bin/sra_search.

ctb commented 1 year ago

Current failure mode:

  Installing searcher v0.1.0 (https://github.com/sourmash-bio/sra_search#617f246f)
    Updating crates.io index
    Updating git repository `https://github.com/sourmash-bio/sourmash`
error: failed to compile `searcher v0.1.0 (https://github.com/sourmash-bio/sra_search#617f246f)`, intermediate artifacts can be found at `/tmp/cargo-install8bLRVg`

Caused by:
  failed to get `sourmash` as a dependency of package `searcher v0.1.0 (/home/ctbrown/.cargo/git/checkouts/sra_search-3b5ae72f8a2152dc/617f246/searcher)`

Caused by:
  failed to load source for dependency `sourmash`

Caused by:
  Unable to update https://github.com/sourmash-bio/sourmash?branch=lirber/nodegraph_containment

Caused by:
  failed to find branch `lirber/nodegraph_containment`

Caused by:
  cannot locate remote-tracking branch 'origin/lirber/nodegraph_containment'; class=Reference (4); code=NotFound (-3)
ctb commented 1 year ago

yay! works!