Search (very) large public databases with sourmash sketches

Run it like so:

snakemake -s magsearch.snakefile --configfile config.yml -j 32

Needs ~40 GB of RAM, 32 cores.

To run "integration" test on farm, use:

snakemake -s magsearch.snakefile -j 2 --configfile config-test.yml

License & authorship

This repository was originally forked from https://github.com/sourmash-bio/sra_search.

This software is under the AGPL license. Please see LICENSE.txt.

Authors:

Luiz Irber N. Tessa Pierce-Ward C. Titus Brown