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**Submitting Author:** Tessa Pierce-Ward (@bluegenes)
**All current maintainers:** @ctb, @luizirber, @bluegenes
**Package Name:** sourmash
**One-Line Description of Package:** `sourmash` is a comma…
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I am using sourmash to compare some custom kmer sets. I've used `sourmash compare` successfully, but in scaling up, I hit memory issues. To fix this, I tried `sourmash scripts pairwise`, which is much…
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I have generated a `directsketch` sourmash database from GenBank assembly txt files with:
```
rule gather_sketch_reversioned:
input:
reversion = "data/update.{d}-{D}.csv",
outpu…
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the betterplot plugin (#3178 and https://github.com/sourmash-bio/sourmash_plugin_betterplot/) provides some nice additional visualization capabilities to sourmash, and several of the commands work dir…
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- e.g., to be able to give an estimate stating something like "X% of reads from sample X recruit to the MAGs recovered from sample X" (or put another way, "How much of the starting read data made it t…
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I think sourmash is an interesting tool, as it is so fast in scanning vast libraries of genomes. We should add support for its output.
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Hello,
Hope you are well! I am having trouble getting the development environment set up for this following the [developer docs](https://github.com/sourmash-bio/sourmash_plugin_branchwater/blob/main/…
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Hello, hope you are well!
I am very excited to try out the low-memory and fast searches created by RocksDB :) (Also, I will definitely be making use of `pairwise`!)
On my way there, I encountere…
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hi nice people,
I'm interested in doing some sourmash-y stuff with ATB, for which we would need to sketch the genomes. @iqbal-lab mentioned that this was in process [over on bluesky](https://bsky.a…
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### Description of feature
I was reading the SourMash documentation, and noticed it can be used for genome classification. Could be a nice one to have - there are pre-made databases available for bot…