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jflucier
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ILL_pipelines
Isabelle Laforest-Lapointe Laboratory code
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multithread sourmash gather avec Branchwater
#75
jorondo1
closed
1 month ago
3
phylogeny sur nodes
#74
jorondo1
opened
7 months ago
24
humann update
#73
jorondo1
closed
8 months ago
1
Erreur avec MicrobeAnnotator
#72
jorondo1
closed
8 months ago
1
dependence du metawrap assemblage pipeline à la présence de NCBI_nt et NCBI_tax
#71
jorondo1
closed
8 months ago
1
FATAL: failed to open /bin/sh for inspection: failed to open elf binary /bin/sh: read /bin/sh: input/output error
#70
jorondo1
closed
7 months ago
3
sourmash signatures
#69
jorondo1
closed
9 months ago
9
problème persistant compute node copy reached max of 5 parralel copy, will wait 15 sec...
#68
jorondo1
closed
7 months ago
4
GUNC
#67
jorondo1
closed
10 months ago
4
options slurm ne se rendent pas au script d'assemblage
#66
jorondo1
closed
10 months ago
1
ajouter les unpaired à megahit
#65
jorondo1
opened
10 months ago
0
problems avec Maxbin
#64
jorondo1
closed
10 months ago
1
compute node copy reached max of 5 parralel copy, will wait 15 sec...
#63
jorondo1
closed
10 months ago
2
erreur annotation pipeline
#62
jorondo1
closed
10 months ago
3
assembly: certains samples ne démarrent pas sur les noeuds
#61
jorondo1
closed
10 months ago
4
maxbin plante, semble manquer un chemin
#60
jorondo1
closed
10 months ago
38
single quote drep regex file path
#59
jorondo1
closed
10 months ago
3
cannot stat kneaddata container
#58
jorondo1
closed
7 months ago
1
Schéma dry-pipe
#57
jorondo1
opened
1 year ago
2
humann default search-mode
#56
jorondo1
closed
1 year ago
1
Installation Metaphlan4
#55
jorondo1
closed
1 year ago
4
MAG Functional Annotation
#54
jorondo1
closed
1 year ago
2
Installation GTDB-Tk
#53
jorondo1
closed
1 year ago
1
sourmash code pas up to date sur mp2?
#52
jorondo1
closed
1 year ago
4
assembly repair.sh semble produire un fichier vide
#51
jorondo1
closed
1 year ago
6
output basename humann script
#50
jorondo1
closed
1 year ago
3
allsamples script invalid option
#49
jorondo1
closed
1 year ago
1
taxonomy table gen bug
#48
jflucier
closed
1 year ago
3
clustering bins from multiple samples
#47
jflucier
closed
1 year ago
27
assembly échantillon GQ35 (array=4)
#46
jorondo1
closed
1 year ago
4
changement de config file
#45
jorondo1
closed
1 year ago
4
/var/spool/slurmd/job81640/slurm_script: conda: command not found
#44
jorondo1
closed
1 year ago
1
MetaWRAP assembly, binning and bin refinement not working
#43
sarahisherb
closed
1 year ago
6
METABOLIC-G unable to run: No such file or directory
#42
sarahisherb
closed
1 year ago
1
Premier test roary
#41
jorondo1
closed
1 year ago
10
cannot stat sourmash db
#40
jorondo1
closed
1 year ago
2
CommandNotFoundError: Your shell has not been properly configured to use 'conda activate'.
#39
jorondo1
closed
1 year ago
11
Roary integration
#38
jorondo1
closed
1 year ago
1
contigs functional annotation with kofamscan
#37
jorondo1
closed
1 year ago
13
run metawrap par modules
#36
jorondo1
closed
1 year ago
2
segmentation fault spades
#35
jorondo1
closed
1 year ago
31
sourmash
#34
jflucier
closed
1 year ago
9
multiQc integration
#33
jorondo1
closed
1 year ago
3
first commit
#32
jorondo1
closed
2 years ago
7
petits changements au script preprocess
#31
jorondo1
closed
2 years ago
1
output folders
#30
jorondo1
closed
2 years ago
3
humann: error: argument --threads: expected one argument
#29
jorondo1
closed
2 years ago
1
slurm base vs fat nodes
#28
jflucier
closed
2 years ago
2
bugs-list in db name
#27
jorondo1
closed
2 years ago
3
CHECKM
#26
jorondo1
closed
2 years ago
1
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