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oxli-bio
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oxli
k-mers and the like
BSD 3-Clause "New" or "Revised" License
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Bump pyo3 from 0.22.6 to 0.23.1
#98
dependabot[bot]
closed
4 days ago
0
Bump sourmash from 0.16.0 to 0.17.2
#97
dependabot[bot]
closed
3 days ago
0
Bump serde_json from 1.0.132 to 1.0.133
#96
dependabot[bot]
closed
4 days ago
0
Strand aware kmer counting
#95
Adamtaranto
opened
4 days ago
2
Bump serde from 1.0.213 to 1.0.215
#94
dependabot[bot]
closed
6 days ago
1
Bump pyo3 from 0.22.5 to 0.22.6
#93
dependabot[bot]
closed
6 days ago
0
Bump anyhow from 1.0.92 to 1.0.93
#92
dependabot[bot]
closed
6 days ago
0
MRG: minor refactorings: use &str, fix cargo clippy
#91
ctb
closed
4 days ago
2
Bump anyhow from 1.0.91 to 1.0.92
#90
dependabot[bot]
closed
2 weeks ago
0
Bump serde from 1.0.213 to 1.0.214
#89
dependabot[bot]
closed
6 days ago
3
Question: Migrating from Khmer
#88
dcdanko
opened
2 weeks ago
4
WIP: use `HashIntoType` and custom hashing instead of `u64`
#87
ctb
opened
3 weeks ago
0
optimization thoughts
#86
ctb
opened
3 weeks ago
2
Bump serde from 1.0.210 to 1.0.213
#85
dependabot[bot]
closed
3 weeks ago
0
Bump anyhow from 1.0.90 to 1.0.91
#84
dependabot[bot]
closed
3 weeks ago
0
WIP: start working on parallel table construction from sequence chunks
#83
ctb
opened
3 weeks ago
0
MRG: do a single pass reverse complement in `kmers_and_hashes`
#82
ctb
closed
3 weeks ago
0
Bump sourmash from 0.15.2 to 0.16.0
#81
dependabot[bot]
closed
1 month ago
0
Bump anyhow from 1.0.89 to 1.0.90
#80
dependabot[bot]
closed
1 month ago
0
Bump pyo3 from 0.22.4 to 0.22.5
#79
dependabot[bot]
closed
1 month ago
0
Bump serde_json from 1.0.128 to 1.0.132
#78
dependabot[bot]
closed
1 month ago
0
Load kmer counts from file
#77
Adamtaranto
opened
1 month ago
1
Bump pyo3 from 0.22.3 to 0.22.4
#76
dependabot[bot]
closed
1 month ago
0
dump_kmers fails after removing records with maxcut
#75
Adamtaranto
closed
3 weeks ago
0
implement a `kmers()` method
#74
dr-joe-wirth
opened
1 month ago
21
WIP: Combine KmerCountTables with Add()
#73
Adamtaranto
opened
1 month ago
6
Bump sourmash from 0.15.1 to 0.15.2
#72
dependabot[bot]
closed
1 month ago
3
Benchmarking
#71
Adamtaranto
opened
1 month ago
0
MRG: Make kmers_and_hashes iterable
#70
Adamtaranto
closed
3 weeks ago
8
Init Pytest action
#69
Adamtaranto
closed
1 month ago
1
Add Github action for Pytest
#68
Adamtaranto
closed
1 month ago
1
Add ruff token
#67
Adamtaranto
closed
1 month ago
2
propose updates to sourmash to make `kmers_and_hashes` code less cumbersome
#66
ctb
opened
1 month ago
1
Update authors
#65
Adamtaranto
closed
1 month ago
0
upgrade @Adamtaranto to full Author in README :)
#64
ctb
closed
1 month ago
1
Bad kmer handling
#63
Adamtaranto
closed
1 month ago
3
Add and Subtract methods
#62
Adamtaranto
opened
1 month ago
0
Github Pages vs Wiki
#61
Adamtaranto
opened
1 month ago
0
MRG: release version 0.3.0
#60
ctb
closed
1 month ago
0
MRG: add 'environment' and 'permissions' to release CI
#59
ctb
closed
1 month ago
0
re-enable branch protection based on CI
#58
ctb
closed
1 month ago
1
MRG: update ci from maturin; bump version
#57
ctb
closed
1 month ago
0
MRG: release candidate + wheel publication fix
#56
ctb
closed
1 month ago
0
fix typo
#55
Adamtaranto
closed
2 months ago
0
fix typo
#54
Adamtaranto
closed
2 months ago
0
ruff.yml action fails to restart other CI jobs
#53
Adamtaranto
closed
1 month ago
1
Minor test edits + Gitpod config
#52
Adamtaranto
closed
2 months ago
0
Rename allow_bad_kmers
#51
Adamtaranto
closed
1 month ago
2
update lock
#50
Adamtaranto
closed
2 months ago
0
MRG: update serialization code
#49
ctb
closed
2 months ago
0
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