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oxli-bio
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oxli
k-mers and the like
BSD 3-Clause "New" or "Revised" License
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MRG: update tests for distance metrics to test symmetry, with a bit of paranoia thrown in
#48
ctb
closed
2 months ago
0
MRG: use 'expect' instead of 'unwrap'
#47
ctb
closed
2 months ago
0
Do format updates on top of current commit rather than head.
#46
Adamtaranto
closed
2 months ago
0
WIP: Add distance metrics
#45
Adamtaranto
closed
2 months ago
1
Move workflow
#44
Adamtaranto
closed
2 months ago
0
Update authors
#43
Adamtaranto
closed
2 months ago
0
Use Ruff for auto formatting
#42
Adamtaranto
closed
2 months ago
0
add `cargo clippy` run
#41
ctb
opened
2 months ago
0
MRG: add `kmers_and_hashes` method to get canonical kmers + hashes
#40
ctb
closed
1 month ago
6
support Jaccard and angular similarity calculations
#39
ctb
closed
2 months ago
4
investigate protein k-mers as well as translation
#38
ctb
opened
2 months ago
0
update doctests to show off all the new methods
#37
ctb
opened
2 months ago
0
update authors!
#36
ctb
closed
2 months ago
0
check on rust documentation!
#35
ctb
closed
2 months ago
1
MRG: some suggested changes for new dunder methods
#34
ctb
closed
2 months ago
0
Bump anyhow from 1.0.87 to 1.0.89
#33
dependabot[bot]
closed
2 months ago
0
Bump pyo3 from 0.22.2 to 0.22.3
#32
dependabot[bot]
closed
2 months ago
1
Add Serialisation Support
#31
Adamtaranto
closed
2 months ago
1
Add dump function to write counts to file
#30
Adamtaranto
closed
2 months ago
1
Add histo for frequency counts
#29
Adamtaranto
closed
2 months ago
1
Removing kmer records
#28
Adamtaranto
closed
2 months ago
0
Add new dunder methods and attributes
#27
Adamtaranto
closed
2 months ago
2
Dev notes
#26
Adamtaranto
closed
2 months ago
0
Serialising KmerCountTables
#25
Adamtaranto
closed
2 months ago
2
Add .dump() method
#24
Adamtaranto
closed
2 months ago
3
Add histo function to get frequency counts
#23
Adamtaranto
closed
2 months ago
0
Multithreaded file and string consumption
#22
Adamtaranto
opened
2 months ago
4
Store hash to kmer map
#21
Adamtaranto
closed
3 weeks ago
9
Add __len__ and __iter__ methods
#20
Adamtaranto
closed
2 months ago
0
Remove records by kmer or hash
#19
Adamtaranto
closed
2 months ago
0
Add Count Thresholding
#18
Adamtaranto
closed
2 months ago
0
add `black` to handle python code formatting
#17
ctb
closed
2 months ago
3
do we want to use a new organization?
#16
ctb
closed
2 months ago
1
fix binary wheel building & uploading to pypi
#15
ctb
closed
2 months ago
9
Bump anyhow from 1.0.86 to 1.0.87
#14
dependabot[bot]
closed
2 months ago
0
Feature Discussion
#13
Adamtaranto
closed
2 months ago
0
Add Set Operation Methods
#12
Adamtaranto
closed
2 months ago
2
MRG: fix `count` bug
#11
ctb
closed
2 months ago
0
WIP: add `consume_file`
#10
ctb
opened
2 months ago
3
MRG: add conda docs
#9
ctb
closed
2 months ago
0
MRG: bump to version 0.2.2
#8
ctb
closed
2 months ago
0
MRG: bad k-mer detection, forcing, and error handling
#7
ctb
closed
2 months ago
0
Bump pyo3 from 0.19.2 to 0.22.2
#6
dependabot[bot]
closed
2 months ago
2
Bump actions/checkout from 3 to 4
#5
dependabot[bot]
closed
2 months ago
0
Bump actions/upload-artifact from 3 to 4
#4
dependabot[bot]
closed
2 months ago
3
Bump actions/setup-python from 4 to 5
#3
dependabot[bot]
closed
2 months ago
0
Bump actions/download-artifact from 3 to 4
#2
dependabot[bot]
closed
2 months ago
2
MRG: misc updates
#1
ctb
closed
2 months ago
0
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