nf-core taxprofiler issues

nf-core / taxprofiler

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

https://nf-co.re/taxprofiler

MIT License

128 stars 36 forks source link

issues

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v1.2.1 - Bouncy Basenji Patch PR

#554 sofstam opened 5 hours ago
1
Bump the version before patch release v 1.2.1

#553 LilyAnderssonLee closed 5 hours ago
1
update the module nonpareil/curve

#552 LilyAnderssonLee closed 3 days ago
1
error running test profile with conda

#551 AnotherSimon opened 5 days ago
4
Update krakenuniq

#550 Midnighter closed 4 days ago
15
Add darkmode diagram

#549 jfy133 closed 4 days ago
1
Add darkmode version of metromap

#548 jfy133 closed 1 month ago
1
Add option for BBTools Clumpify optical deduplication

#547 funnell opened 1 month ago
1
Add a feature to generate samplesheet for differentialabundance

#546 LilyAnderssonLee opened 1 month ago
0
Important! Template update for nf-core/tools v3.0.2

#545 nf-core-bot closed 1 month ago
4
Add support for generating mag samplesheet

#544 sofstam opened 1 month ago
4
Non pareil fails if data is insufficient for calculation due to a missing png

#543 jfy133 closed 3 days ago
1
Create a samplesheet for mag

#542 sofstam opened 1 month ago
0
Create samplesheets for differentialabundance

#541 LilyAnderssonLee opened 1 month ago
0
Important! Template update for nf-core/tools v3.0.1

#540 nf-core-bot closed 1 month ago
1
Important! Template update for nf-core/tools v3.0.0

#539 nf-core-bot closed 1 month ago
1
Bump up the version number after 1.2 release

#538 sofstam closed 1 month ago
1
Update the module motus/merge

#537 LilyAnderssonLee closed 1 month ago
1
Overwrite the search patten of filtlong in multiqc_config.yml

#536 LilyAnderssonLee closed 1 month ago
1
Update documentation to include db_type

#535 sofstam closed 1 month ago
2
Check if all small files are included in tower.yml

#534 LilyAnderssonLee closed 2 months ago
1
KrakenUniq SE overwrites the output when there is an early dot in the sample name

#533 SannaAb opened 2 months ago
7
Improve documentation for Bracken ignore errorStrategy

#532 jfy133 closed 2 months ago
1
Final @jfy133 review fixes for Bouncy Basenji release

#531 jfy133 closed 2 months ago
1
Addressing Austyn Trull's bouncy-basneji review comments

#530 jfy133 closed 2 months ago
2
Filenames of output file?

#529 Thomieh73 closed 2 months ago
4
Additional minor fixes from @jfy133's review for bouncy basenji release

#528 jfy133 closed 2 months ago
1
Update tubemap to add missing tools and fix bug around samtools stats

#527 jfy133 closed 2 months ago
1
Ensure alternative long-read processing tools included in tests

#526 jfy133 closed 2 months ago
2
v1.2 - Bouncy Basenji Release PR

#525 jfy133 closed 1 month ago
6
Version bump for 1.2 bouncy-basenji release

#524 LilyAnderssonLee closed 2 months ago
1
correct parameter to use lca for multiple matches in ganon classify

#523 LilyAnderssonLee closed 2 months ago
3
Remove nanopore patch

#522 jfy133 closed 2 months ago
2
PORECHOP_ABI patch (on bouncy_basenji dev branch) overwrites input

#521 jfy133 closed 2 months ago
0
Can't pass `save_analysis_ready_fastqs` in local configuration file.

#520 muniheart closed 2 months ago
3
Bouncy basenji pre-release PR

#519 jfy133 closed 2 months ago
1
Fix nanopore fasta input being incorrectly channeled

#518 jfy133 closed 2 months ago
5
New feature: melon - long reads profiler

#517 LilyAnderssonLee opened 2 months ago
0
Add the interactive visualisation tool GRIMER

#516 LilyAnderssonLee opened 3 months ago
0
Update Nonpareil to latest, add native MultiQC support, update output docs, fix MultiQC methods section

#515 jfy133 closed 3 months ago
1
Remove and consolidate duplicated emit

#514 jfy133 closed 3 months ago
1
Have checks that if sub-parameter activate but main parameter not, error or give warning

#513 jfy133 opened 3 months ago
0
Update modules

#512 LilyAnderssonLee closed 2 months ago
10
Add porechop_abi to the pipeline

#511 LilyAnderssonLee closed 3 months ago
10
Update MultiQC/porechop module to process both porechop and porechop_abi logs

#510 LilyAnderssonLee closed 3 months ago
1
Taxpasta parameters produce an error exit status of 2 during standardise part

#509 AndreaQ7 opened 4 months ago
5
Add nanoq to the pipeline

#508 LilyAnderssonLee closed 4 months ago
5
fix link to usage docs

#507 mashehu closed 4 months ago
2
Add support for metacache

#506 ChillarAnand opened 4 months ago
0
Add small files to tower.yml

#505 LilyAnderssonLee closed 4 months ago
7