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nf-core
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taxprofiler
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
https://nf-co.re/taxprofiler
MIT License
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Add CAT/BAT/RAT for long reads
#504
LilyAnderssonLee
opened
5 months ago
0
Add a long read classifier: lemur
#503
LilyAnderssonLee
opened
5 months ago
0
Update nonpareil to allow gzip input
#502
jfy133
closed
2 months ago
4
Post release version bump
#501
jfy133
closed
5 months ago
2
Post release vbump
#500
jfy133
closed
5 months ago
0
1.1.8 Patch Release
#499
jfy133
closed
5 months ago
1
Version bump for 1.1.8 patch release
#498
jfy133
closed
5 months ago
1
Add support for the sylph profiler
#497
Midnighter
opened
5 months ago
0
Add MetaMaps classifier
#496
sofstam
closed
2 months ago
4
Update Taxpasta update to reduce pipeline failures from overly strict profile validation
#495
jfy133
closed
5 months ago
1
Merged tables not produced if not run with --run_profile_standardisation
#494
apalleja
opened
5 months ago
1
Don't force same KMCP mode for all database
#493
jfy133
closed
5 months ago
2
Add support Metabuli.
#492
Joon-Klaps
opened
5 months ago
0
Add flag to publish intermediate bracken files
#491
sofstam
closed
5 months ago
2
Missing changelog, put logo back in MQC report
#490
jfy133
closed
6 months ago
1
Fix KrakenUniq classified reads output format mismatch
#489
jfy133
closed
6 months ago
2
No logo in multiqc report
#488
jfy133
closed
6 months ago
1
Important! Template update for nf-core/tools v2.14.1
#487
nf-core-bot
closed
6 months ago
1
Update_documentation
#486
sofstam
closed
6 months ago
1
Add example in documentation for multiple runs of the same sample
#485
sofstam
closed
6 months ago
0
Improve validation of run_accessions IDs within sample IDs
#484
jfy133
closed
6 months ago
6
The run_accession and sample_name should be unique.
#483
sofstam
closed
6 months ago
0
Important! Template update for nf-core/tools v2.14.0
#482
nf-core-bot
closed
6 months ago
1
Bump version into 1.1.8dev
#481
LilyAnderssonLee
closed
7 months ago
1
Recommended procedure for profiling nanopore data
#480
bcpd
closed
7 months ago
1
taxprofiler krona output files missing
#479
aslangabriel99
closed
7 months ago
1
Patch release 1.1.7
#478
LilyAnderssonLee
closed
7 months ago
1
Bump version into v1.1.7
#477
LilyAnderssonLee
closed
7 months ago
3
Drop db_params patterns for bracken and kmcp
#476
LilyAnderssonLee
closed
7 months ago
7
Database parameter validation for bracken doesn't work currently
#475
jfy133
closed
7 months ago
0
KrakenUniq read extraction
#474
SannaAb
closed
6 months ago
4
fixed typo in tutorial
#473
ilight1542
closed
7 months ago
1
bump the pipeline version into 1.1.7dev
#472
LilyAnderssonLee
closed
7 months ago
1
Remove stub run in download_pipeline.yml
#471
LilyAnderssonLee
closed
7 months ago
4
Fix download pipeline workflow
#470
LilyAnderssonLee
closed
7 months ago
1
Patch release: 1.1.6
#469
LilyAnderssonLee
closed
7 months ago
9
bump the version
#468
LilyAnderssonLee
closed
7 months ago
1
Lily andersson lee merge dev into bouncy
#467
jfy133
closed
7 months ago
1
Add the column db_type to database sheet
#466
LilyAnderssonLee
closed
5 months ago
4
Merge dev into bouncy
#465
LilyAnderssonLee
closed
7 months ago
0
Fix combine
#464
Midnighter
closed
7 months ago
5
Update nf-validation and turn off kaiju2krona output
#463
LilyAnderssonLee
closed
8 months ago
1
Current UNTAR scheme inefficent and can cause overwriting for database sheet input
#462
jfy133
closed
7 months ago
1
Try adding nextflow strict
#461
jfy133
closed
7 months ago
8
Failed to produce kaiju_combined_reports.txt
#460
LilyAnderssonLee
closed
7 months ago
4
correct nanopore and fasta input channel - branch "dev"
#459
LilyAnderssonLee
closed
8 months ago
1
update the nanopore and fasta input channel- branch "bouncy-basenji"
#458
LilyAnderssonLee
closed
8 months ago
1
Correcting the NANOPORE and FASTA reads channel
#457
LilyAnderssonLee
closed
8 months ago
3
Move/copy DB troubleshooting content from Usage/Tutorial to Usage/ or new Usage/Database-troubleshooting
#456
vmkalbskopf
closed
7 months ago
1
Merge dev into bouncy-basenji
#455
LilyAnderssonLee
closed
8 months ago
1
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