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nf-core
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taxprofiler
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
https://nf-co.re/taxprofiler
MIT License
128
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36
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Correcting the NANOPORE and FASTA reads channel
#457
LilyAnderssonLee
closed
8 months ago
3
Move/copy DB troubleshooting content from Usage/Tutorial to Usage/ or new Usage/Database-troubleshooting
#456
vmkalbskopf
closed
7 months ago
1
Merge dev into bouncy-basenji
#455
LilyAnderssonLee
closed
8 months ago
1
Important! Template update for nf-core/tools v2.13.1
#454
nf-core-bot
closed
8 months ago
1
Logo fix
#453
jfy133
closed
8 months ago
2
Logo does not match the logo in tube
#452
sofstam
closed
9 months ago
1
Nf core template merge 2.13
#451
sofstam
closed
9 months ago
1
Important! Template update for nf-core/tools v2.13
#450
nf-core-bot
closed
9 months ago
1
Generate samplesheet for nf-core/mag
#449
CarsonJM
opened
9 months ago
4
Dev to bouncy-basenji
#448
sofstam
closed
9 months ago
1
Bump up the pipeline version number in the dev branch
#447
sofstam
closed
9 months ago
2
Update ganon
#446
sofstam
closed
2 months ago
5
Bump version
#445
sofstam
closed
9 months ago
2
Centrifuge update to address mkfifo clashes
#444
jfy133
closed
9 months ago
10
Patch release: 1.1.5
#443
sofstam
closed
9 months ago
3
Important! Template update for nf-core/tools v2.12
#442
nf-core-bot
closed
10 months ago
3
Add informative message with solution for resource avaiability warning
#441
jfy133
closed
10 months ago
2
Include a pre-built kaiju indexes in tutorial.md
#440
Joon-Klaps
closed
10 months ago
1
Adding shortread deduplication feature with fastp
#439
maxibor
closed
10 months ago
7
Bouncy basenji
#438
sofstam
closed
10 months ago
1
Merge dev into bouncy-basenji
#437
sofstam
closed
10 months ago
0
Bump pipeline 1.1.4 version into dev
#436
sofstam
closed
10 months ago
2
1.1.4 Patch release
#435
sofstam
closed
10 months ago
2
Bump version for patch release 1.1.4
#434
sofstam
closed
10 months ago
1
1.1.4 Patch release
#433
sofstam
closed
10 months ago
4
Update kaiju2table module
#432
sofstam
closed
10 months ago
2
kaiju2table not reporting taxon names
#431
sofstam
closed
10 months ago
0
Fix the multiple fastq outputs in LONGREAD_HOSTREMOVAL
#430
LilyAnderssonLee
closed
10 months ago
1
Empty files were also published from the module samtools/fastq
#429
LilyAnderssonLee
closed
10 months ago
0
Post release version bump
#428
jfy133
closed
10 months ago
1
Bump version for patch release
#427
jfy133
closed
10 months ago
1
1.1.3 Patch release
#426
jfy133
closed
10 months ago
1
Update multiqc, fastqc, filtlong, adapterremoval, dumpsoftwareversions
#425
sofstam
closed
10 months ago
2
Important! Template update for nf-core/tools v2.11.1
#424
nf-core-bot
closed
10 months ago
1
Important! Template update for nf-core/tools v2.11
#423
nf-core-bot
closed
11 months ago
1
Centrifuge error : (ERR): mkfifo(/tmp/72.inpipe1) failed.
#422
erinyoung
closed
9 months ago
13
Fix krakenuniq reads output
#421
Midnighter
closed
1 year ago
4
Krakenuniq save_reads does not give the fastq files when using PE data
#420
SannaAb
closed
1 year ago
18
add csv syntax highlighting
#419
mashehu
closed
1 year ago
1
Documentation: Broken Links in "Full database sheet" Section
#418
lennijusten
closed
1 year ago
4
Add nonpareil
#417
jfy133
closed
12 months ago
6
Sync with dev
#416
jfy133
closed
1 year ago
1
Add Nanoq for Nanopore reads
#415
sofstam
closed
4 months ago
1
Adding GetOrganelle
#414
erinyoung
closed
8 months ago
10
Bump version after release
#413
jfy133
closed
1 year ago
1
Release version bump
#412
jfy133
closed
1 year ago
3
1.1.2 release
#411
jfy133
closed
1 year ago
1
Allow multiple bracken profiles with different `-l` levels from the same kraken2 report
#410
MajoroMask
opened
1 year ago
1
Megan container update
#409
jfy133
closed
1 year ago
3
Add preprint citation info
#408
jfy133
closed
1 year ago
1
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