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nf-core
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taxprofiler
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
https://nf-co.re/taxprofiler
MIT License
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36
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megan version 6.21.7 throw `java.lang.NullPointerException` error
#407
MajoroMask
closed
1 year ago
5
Disambiguate same-db name but bracken step kraken from profile mergin…
#406
jfy133
closed
1 year ago
2
Kaiju2krona fix
#405
jfy133
closed
1 year ago
2
`Sourmash` profiler [DO NOT MERGE YET]
#404
vmikk
opened
1 year ago
1
General version update of all tools
#403
jfy133
closed
2 months ago
1
bump version
#402
LilyAnderssonLee
closed
1 year ago
7
Allow hibf in ganon?
#401
SannaAb
opened
1 year ago
8
update changelog
#400
LilyAnderssonLee
closed
1 year ago
2
Fix CHANGELOG.md for patch release v1.1.1
#399
LilyAnderssonLee
closed
1 year ago
1
update changelog
#398
LilyAnderssonLee
closed
1 year ago
3
Update the CHNAGELOG
#397
LilyAnderssonLee
closed
1 year ago
1
MetaPhlAn4 full index provide duplicated 'NCBI_tax_id' to taxpasta as input
#396
MajoroMask
closed
1 year ago
1
`KRONA_KTIMPORTTEXT` input file name collision if same 'db_name' is assigned to kraken2 and bracken
#395
MajoroMask
closed
1 year ago
5
process `VISUALIZATION_KRONA` mis-combined channel by wrong index
#394
MajoroMask
closed
1 year ago
3
Add taxpasta taxdir check
#393
jfy133
closed
1 year ago
3
Update taxpasta module
#392
LilyAnderssonLee
closed
1 year ago
3
Taxpasta parameters produce an error exit status of 2 which asks for a taxonomy even though kraken2 and centrifuge have worked.
#391
alimalrashed
closed
1 year ago
1
Taxpasta parameters produce an error exit status of 2 which asks for a taxonomy even though kraken2 and centrifuge have worked.
#390
alimalrashed
closed
1 year ago
1
update the patch release date
#389
LilyAnderssonLee
closed
1 year ago
1
Patch release V1.1.1
#388
LilyAnderssonLee
closed
1 year ago
4
Fix the patch release date
#387
LilyAnderssonLee
closed
1 year ago
1
[DO NOT MERGE] Release PR v1.1.1
#386
jfy133
closed
1 year ago
1
process `MEGAN_RMA2INFO` JavaFX detected no fonts error
#385
MajoroMask
closed
1 year ago
1
Add support for sequencing coverage esimates with nonpareil
#384
jfy133
closed
1 year ago
4
update krakenuniq module
#383
LilyAnderssonLee
closed
1 year ago
1
Update to nf-core tempate 2.10
#382
jfy133
closed
1 year ago
0
Update KrakenUniq to 1.0.4 due to bug causing misreading if input files
#381
jfy133
closed
1 year ago
0
Important! Template update for nf-core/tools v2.10
#380
nf-core-bot
closed
1 year ago
1
Bracken output report addition
#379
hkaspersen
closed
1 year ago
4
Correct git user name
#378
LilyAnderssonLee
closed
1 year ago
1
Correct the tag description and links
#377
LilyAnderssonLee
closed
1 year ago
1
bump version to v1.2.0dev
#376
LilyAnderssonLee
closed
1 year ago
1
Correct the release date
#375
LilyAnderssonLee
closed
1 year ago
1
Simplify test profiles in CI test
#374
LilyAnderssonLee
opened
1 year ago
1
Add small files to tower.yml
#373
LilyAnderssonLee
closed
5 months ago
1
Update modules
#372
LilyAnderssonLee
closed
1 year ago
4
Update modules
#371
LilyAnderssonLee
closed
1 year ago
1
minor corrections based on reviews
#370
LilyAnderssonLee
closed
1 year ago
1
Fix the input of centrifuge_kreport
#369
LilyAnderssonLee
closed
1 year ago
4
Update Taxpasta to v0.6.0
#368
LilyAnderssonLee
closed
1 year ago
1
format citations into APA
#367
LilyAnderssonLee
closed
1 year ago
2
Format citations and correct command template
#366
LilyAnderssonLee
closed
1 year ago
1
Remove kmcp/merge module
#365
LilyAnderssonLee
closed
1 year ago
1
Add apptainer autoMounts
#364
LilyAnderssonLee
closed
1 year ago
1
Bump the release version
#363
LilyAnderssonLee
closed
1 year ago
2
New release 1.1.0
#362
LilyAnderssonLee
closed
1 year ago
3
Add Eukdetect
#361
maxibor
opened
1 year ago
0
Add taxpasta to pipeline versions
#360
sofstam
closed
1 year ago
1
Taxpasta versions
#359
sofstam
closed
1 year ago
2
KMCP profile mode forced for all databases
#358
jfy133
closed
5 months ago
1
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