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ctlab
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phantasus
Visual exploratory analysis of gene expression data
https://alserglab.wustl.edu/phantasus/
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Select genes in the pathway
#119
assaron
opened
5 years ago
0
Decrease number of ocpu calls
#118
assaron
closed
5 years ago
0
Forbid access to other packages in ocpu
#117
assaron
closed
5 years ago
2
Permanent link should restore the operations on the datasets
#116
shashj
closed
5 years ago
3
How to use fgsea?
#115
shashj
closed
5 years ago
3
Make boxplot chart as default instead of row profile
#114
shashj
closed
5 years ago
4
Serving inconsistencies
#113
vlakam
closed
5 years ago
1
1.3.5
#112
vlakam
closed
5 years ago
0
PCA plot samples selection
#111
vlakam
closed
5 years ago
1
"Copy selected value from NNN» action doesn’t copy anything (Safari)
#110
iromeo
closed
5 years ago
3
Hierarchical Clustering not working in new version of phantasus
#109
shashj
closed
5 years ago
4
Collapse tool with un-annotated probes leads to unexpected result
#108
vlakam
closed
5 years ago
0
Loading dataset from TSV file with zeroes in phenoData leads to unexpected results in tooltip
#107
vlakam
closed
5 years ago
1
White color shouldn't be assigned
#106
assaron
closed
5 years ago
0
Support for splitting columns and rows by annotation value
#105
assaron
closed
5 years ago
1
Order of the columns should be mirrored at GSEA plot heatmap
#104
assaron
opened
5 years ago
0
Save image dataset doesn't include row annotation
#103
vlakam
closed
5 years ago
1
Pathway profile plot
#102
assaron
closed
5 years ago
0
All plots should be saveable to vector format
#101
assaron
closed
5 years ago
2
Custom order for sorting
#100
assaron
closed
5 years ago
1
Error in GSEA when the expression matrix contains only one column
#99
assaron
closed
5 years ago
0
GSEA plot heatmap annotation colors should be same as in main heatmap
#98
assaron
closed
5 years ago
1
Support for limma voom normalization
#97
assaron
closed
5 months ago
1
Compatibility with GENE-E
#96
kesaulova
closed
5 years ago
1
1.2.0
#95
vlakam
closed
5 years ago
0
Develop
#94
vlakam
closed
5 years ago
0
Windows fix.
#93
vlakam
closed
5 years ago
0
1.1.4 RC2
#92
vlakam
closed
5 years ago
0
RC 1.1.4
#91
vlakam
closed
6 years ago
0
Tutorial for processing qPCR data
#90
assaron
opened
6 years ago
0
Default preloaded datasets should be available from genome.ifmo.ru
#89
assaron
closed
6 years ago
1
Move to nginx in docker
#88
assaron
closed
6 years ago
1
Adjust dialog should be properly mirrored
#87
assaron
closed
6 years ago
1
Creating calculated annotation dialog should be simplified
#86
assaron
closed
6 years ago
1
Develop
#85
vlakam
closed
6 years ago
0
Kamenv to develop
#84
vlakam
closed
6 years ago
1
Vertical GSEA in R
#83
vlakam
closed
6 years ago
1
The last name used to rename a tab "sticks around"
#82
hpages
closed
6 years ago
1
Searching a Gene symbol is confusing
#81
hpages
closed
6 years ago
0
Support for GPLs with only user-supplied annotation
#80
assaron
closed
5 months ago
1
Inferring conditions
#79
rsablina
closed
6 years ago
1
Osx bioc devel
#78
assaron
closed
6 years ago
1
Should be a way to rename metadata field names
#77
assaron
closed
6 years ago
1
Add method for adjustment to sample annotation
#76
assaron
closed
6 years ago
1
PCA plot colors should be changable
#75
assaron
closed
6 years ago
1
New tutorial
#74
vlakam
closed
6 years ago
1
Support for gene expression data sources
#73
assaron
opened
6 years ago
0
Shiny GAM Analysis function
#72
vlakam
closed
6 years ago
1
Small readme fixes
#71
vlakam
closed
6 years ago
1
Incorrect handling of consecutive column subsets
#70
assaron
closed
6 years ago
1
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