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cytham / nanovar

Structural variant caller for low-depth long-read sequencing data
GNU General Public License v3.0
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update conda version #76

Closed bwlang closed 10 months ago

bwlang commented 10 months ago

Thanks for sharing this interesting work! I struggled a bit with the conda version, which seems to be broken. Maybe you could update or remove it to avoid others getting stuck?

cytham commented 10 months ago

Hi @bwlang, there is an issue installing NanoVar with Conda now. Can you please install using pip inside your conda env?

pip install nanovar

We will try to resolve the conda issue soon, sorry for the inconvenience.

bwlang commented 10 months ago

I was able to get things working that way (and got some nice results - thanks!) Maybe it's worth removing it from conda until you are able to resolve the issue.