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cytham / nanovar

Structural variant caller for low-depth long-read sequencing data
GNU General Public License v3.0
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Alternative sequence in VCF #81

Closed jiadong324 closed 4 weeks ago

jiadong324 commented 6 months ago

Hi,

Is that possible to add the alternative sequence in the VCF file?

cytham commented 6 months ago

Hi @jiadong324 , let me try to work on this.

jiadong324 commented 5 months ago

@cytham Hey, I found you update to v1.6.2, just wondering whether it is able to report the alternative sequence in the VCF file. Thanks!

cytham commented 5 months ago

Hi @jiadong324, still working on this, will include the alternative sequences of INS and DEL SVs in the next update. I need a few more days. Thank you for your patience.

cytham commented 5 months ago

Hi @jiadong324, I have a beta version that I am still testing. If you would like to try it first, you can clone it from the branch by:

git clone -b add-alt-seq https://github.com/cytham/nanovar.git

Appreciate any feedback.

I will merge it into the master once I'm done testing in the next few days.

Thanks

jiadong324 commented 5 months ago

Thanks for the update, I will wait once you merge to master.

cytham commented 4 weeks ago

Alt sequence versions have been merged into master. I'll close this for now.