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cytham / nanovar

Structural variant caller for low-depth long-read sequencing data
GNU General Public License v3.0
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Add alt seq and cram support #87

Closed cytham closed 5 months ago

cytham commented 5 months ago 
* Added alternative sequence for INS and DEL in VCF
* Added CRAM input support
* Modified SV ID format with addition of SV type, from nv_SV?-????? to NV.INS.SV?-?????
* SV size now takes the median size amongst clustered reads, instead of the largest