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cytham
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nanovar
Structural variant caller for low-depth long-read sequencing data
GNU General Public License v3.0
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Unable to install using conda
#43
beantkapoor786
closed
2 years ago
4
Bump tensorflow-cpu from 2.6.0 to 2.6.3
#42
dependabot[bot]
closed
2 years ago
1
Error: Unrecognized CIGAR translated symbol "3"
#41
infotmatician
closed
2 years ago
2
Bump pillow from 8.3.2 to 9.0.0
#40
dependabot[bot]
closed
2 years ago
1
Bump tensorflow-cpu from 2.6.0 to 2.6.1
#39
dependabot[bot]
closed
2 years ago
1
After run nanovar, we cannot get the vcf results, could you give some advice?
#38
zch0803
closed
3 years ago
6
Corrected the minimap2 pacbio preset bug in nanovar/nv_align.py
#37
LYC-vio
closed
3 years ago
0
Nanovar does not parse -x correctly when utilizing minimap2
#36
LYC-vio
closed
3 years ago
3
output does not match input data
#35
MeiShu00
closed
3 years ago
4
Dev
#34
cytham
closed
3 years ago
0
Bump pillow from 8.3.1 to 8.3.2
#33
dependabot[bot]
closed
3 years ago
0
v1.4.0 update
#32
cytham
closed
3 years ago
0
Bump tensorflow from 2.4.1 to 2.5.1
#31
dependabot[bot]
closed
3 years ago
0
Bump tensorflow-cpu from 2.4.1 to 2.5.1
#30
dependabot[bot]
closed
3 years ago
0
CRITICAL - Error: hs-blastn alignment failed
#29
MingchenInSZ
closed
3 years ago
10
AttributeError: 'str' object has no attribute 'decode'
#28
gchevignon
closed
3 years ago
41
Bump urllib3 from 1.24.2 to 1.26.5
#27
dependabot[bot]
closed
3 years ago
0
Bump tensorflow from 2.4.1 to 2.5.0
#26
dependabot[bot]
closed
3 years ago
1
"Exeption: Read has none or more than 2 clusters" error
#25
kristinastenlokk
closed
3 years ago
5
Why sv_support_read contains reads from other chromosome?
#24
yekaizhou
closed
3 years ago
3
Bump rsa from 4.0 to 4.7
#23
dependabot[bot]
closed
3 years ago
0
sv_cluster() Error
#22
kztyes
closed
3 years ago
12
Bump rsa from 4.0 to 4.1
#21
dependabot[bot]
closed
3 years ago
1
Bump tensorflow from 2.3.1 to 2.4.0
#20
dependabot[bot]
closed
3 years ago
0
Nanovar fails with Python KeyError when clustering breakends
#19
oneillkza
closed
3 years ago
5
Nanovar segfaults on Neural network inference stage
#18
oneillkza
closed
3 years ago
15
Bump cryptography from 3.2 to 3.3.2
#17
dependabot[bot]
closed
3 years ago
0
Bump tensorflow from 2.1.0 to 2.3.1
#16
dependabot[bot]
closed
4 years ago
0
Bump cryptography from 2.8 to 3.2
#15
dependabot[bot]
closed
4 years ago
0
Bump tensorflow from 2.1.0 to 2.1.2
#14
dependabot[bot]
closed
4 years ago
1
raise Exception("Read %s has none or more than 2 clusters" % read)
#13
yuntwang
closed
4 years ago
6
OMP: Error #15: Initializing libomp.so
#12
umahsn
closed
4 years ago
2
Failure when generating HTML report
#11
tdido
closed
4 years ago
9
Intersecting NanoVar SVs
#10
asmariyaz23
closed
4 years ago
1
Nanovar makeblastdb failed
#9
jiadong324
closed
4 years ago
36
How to use nanovar to do population-scale SV calling?
#8
xiekunwhy
closed
4 years ago
2
hs-blastn alignment failed
#7
zihhuafang
closed
4 years ago
27
IndexError: list index out of range
#6
Tintest
closed
4 years ago
11
Error loading vcf file into IGV
#5
jagos01
closed
4 years ago
8
Run fails at nv_cluster.py IndexError: list index out of range
#4
asmariyaz23
closed
4 years ago
4
Updated README.md
#3
benoukraflab
closed
4 years ago
0
Annotating variants called by NanoVar
#2
asmariyaz23
closed
4 years ago
1
Boundaries does not match error
#1
asmariyaz23
closed
4 years ago
5
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