cytomining profiling-handbook issues

cytomining / profiling-handbook

Image-based Profiling Handbook

https://cytomining.github.io/profiling-handbook/

Creative Commons Zero v1.0 Universal

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issues

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Specify software versions

#75 shntnu opened 8 months ago
0
Add other resources page

#74 bethac07 opened 1 year ago
0
mat => npy in appendix file structure

#73 ErinWeisbart closed 8 months ago
0
Update 05-create-profiles.md

#72 bethac07 closed 1 year ago
0
Handbook discrepancy: <top-level>/<batch> vs. <top-level>/images/<batch>

#71 shntnu opened 2 years ago
0
Handbook discrepancy: metadata/<batch> vs metadata/<batch>/platemaps

#70 bethac07 opened 2 years ago
8
Updated instructions for when collating is pulled

#69 bethac07 closed 8 months ago
0
Create a citation file

#68 bethac07 closed 2 years ago
0
Add a citation file

#67 bethac07 closed 2 years ago
0
Convert to jupyter-book

#66 callum-jpg closed 2 years ago
4
Move builds to JupyterBook and GH Actions

#65 bethac07 closed 2 years ago
2
lfs => dvc

#64 ErinWeisbart closed 2 years ago
7
Update 05-create-profiles.Rmd

#63 bethac07 closed 3 years ago
4
Update 05-create-profiles.Rmd

#62 niranjchandrasekaran closed 3 years ago
2
Initial edits after rebuilding

#61 bethac07 closed 3 years ago
0
Update README.md

#60 shntnu closed 3 years ago
0
Update for how we really run things

#59 bethac07 closed 3 years ago
11
Fix paths

#58 shntnu closed 4 years ago
1
Update 05-run-jobs.Rmd for DCP2

#57 shntnu closed 3 years ago
5
Warn that collate doesn't check columns

#56 shntnu closed 4 years ago
0
Fix systematic plate creation

#55 bethac07 closed 4 years ago
0
Define folder structures and implement data versioning

#54 shntnu opened 4 years ago
7
Stated aggregation method (mean) is inconsistent with that used in other projects

#53 shntnu closed 2 years ago
9
Manually remove Costes features

#52 shntnu closed 4 years ago
1
cytominer-vm is now public

#51 shntnu closed 4 years ago
1
Update cytominer-database

#50 shntnu closed 4 years ago
0
Update cytominer-database package

#49 shntnu closed 2 years ago
2
Create list of plates automatically

#48 shntnu closed 4 years ago
0
Create list of plates automatically

#47 shntnu closed 4 years ago
0
du -hs , not du -h

#46 bethac07 closed 4 years ago
1
Streamline comparing Index.idx.xml and config.yml

#45 bethac07 closed 4 years ago
0
Update comparing Index.idx.xml to config.yml

#44 bethac07 closed 4 years ago
0
Update 03-setup-pipelines.Rmd

#43 bethac07 closed 5 years ago
0
Update 06-create-profiles.Rmd

#42 bethac07 closed 5 years ago
0
Add preselect justifications

#41 bethac07 closed 2 years ago
1
Alter instructions to use batch file

#40 bethac07 closed 2 years ago
0
Look into if cytominer_scripts can be made public (keys in git history, etc)

#39 bethac07 closed 4 years ago
5
Re add infrastructure stuff to Chapter 1

#38 bethac07 closed 2 years ago
0
Rewrite imaging-vms to remove private info

#37 bethac07 closed 2 years ago
2
Document Beth's profiling workflow

#36 bethac07 closed 2 years ago
9
Package pe2loaddata

#35 bethac07 closed 2 years ago
1
Jamboree Day - 26 July 2019

#34 gwaybio closed 5 years ago
1
Create an option `match_full_plate_id` in create_csv_from_xml.sh

#33 shntnu closed 5 years ago
0
Update instructions for using with CP3

#32 shntnu closed 2 years ago
0
Add AWS Configuration Note to Config

#31 gwaybio closed 5 years ago
0
Add instructions to use --overwrite_backend_cache

#30 shntnu closed 5 years ago
0
Specify region and AZ in config

#29 gwaybio closed 5 years ago
1
Mounting AWS Volumes in Config

#28 gwaybio closed 2 years ago
5
Specify Virginia as Region

#27 gwaybio closed 5 years ago
0
skipping cleanup flag so travis doesnt wipe book

#26 gwaybio closed 5 years ago
0