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cytomining
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profiling-handbook
Image-based Profiling Handbook
https://cytomining.github.io/profiling-handbook/
Creative Commons Zero v1.0 Universal
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Specify software versions
#75
shntnu
opened
5 months ago
0
Add other resources page
#74
bethac07
opened
9 months ago
0
mat => npy in appendix file structure
#73
ErinWeisbart
closed
5 months ago
0
Update 05-create-profiles.md
#72
bethac07
closed
1 year ago
0
Handbook discrepancy: <top-level>/<batch> vs. <top-level>/images/<batch>
#71
shntnu
opened
1 year ago
0
Handbook discrepancy: metadata/<batch> vs metadata/<batch>/platemaps
#70
bethac07
opened
2 years ago
8
Updated instructions for when collating is pulled
#69
bethac07
closed
5 months ago
0
Create a citation file
#68
bethac07
closed
2 years ago
0
Add a citation file
#67
bethac07
closed
2 years ago
0
Convert to jupyter-book
#66
callum-jpg
closed
2 years ago
4
Move builds to JupyterBook and GH Actions
#65
bethac07
closed
2 years ago
2
lfs => dvc
#64
ErinWeisbart
closed
2 years ago
7
Update 05-create-profiles.Rmd
#63
bethac07
closed
3 years ago
4
Update 05-create-profiles.Rmd
#62
niranjchandrasekaran
closed
3 years ago
2
Initial edits after rebuilding
#61
bethac07
closed
3 years ago
0
Update README.md
#60
shntnu
closed
3 years ago
0
Update for how we really run things
#59
bethac07
closed
3 years ago
11
Fix paths
#58
shntnu
closed
3 years ago
1
Update 05-run-jobs.Rmd for DCP2
#57
shntnu
closed
3 years ago
5
Warn that collate doesn't check columns
#56
shntnu
closed
4 years ago
0
Fix systematic plate creation
#55
bethac07
closed
4 years ago
0
Define folder structures and implement data versioning
#54
shntnu
opened
4 years ago
7
Stated aggregation method (mean) is inconsistent with that used in other projects
#53
shntnu
closed
2 years ago
9
Manually remove Costes features
#52
shntnu
closed
4 years ago
1
cytominer-vm is now public
#51
shntnu
closed
4 years ago
1
Update cytominer-database
#50
shntnu
closed
4 years ago
0
Update cytominer-database package
#49
shntnu
closed
2 years ago
2
Create list of plates automatically
#48
shntnu
closed
4 years ago
0
Create list of plates automatically
#47
shntnu
closed
4 years ago
0
du -hs , not du -h
#46
bethac07
closed
4 years ago
1
Streamline comparing Index.idx.xml and config.yml
#45
bethac07
closed
4 years ago
0
Update comparing Index.idx.xml to config.yml
#44
bethac07
closed
4 years ago
0
Update 03-setup-pipelines.Rmd
#43
bethac07
closed
5 years ago
0
Update 06-create-profiles.Rmd
#42
bethac07
closed
5 years ago
0
Add preselect justifications
#41
bethac07
closed
2 years ago
1
Alter instructions to use batch file
#40
bethac07
closed
2 years ago
0
Look into if cytominer_scripts can be made public (keys in git history, etc)
#39
bethac07
closed
4 years ago
5
Re add infrastructure stuff to Chapter 1
#38
bethac07
closed
2 years ago
0
Rewrite imaging-vms to remove private info
#37
bethac07
closed
2 years ago
2
Document Beth's profiling workflow
#36
bethac07
closed
2 years ago
9
Package pe2loaddata
#35
bethac07
closed
2 years ago
1
Jamboree Day - 26 July 2019
#34
gwaybio
closed
5 years ago
1
Create an option `match_full_plate_id` in create_csv_from_xml.sh
#33
shntnu
closed
5 years ago
0
Update instructions for using with CP3
#32
shntnu
closed
2 years ago
0
Add AWS Configuration Note to Config
#31
gwaybio
closed
5 years ago
0
Add instructions to use --overwrite_backend_cache
#30
shntnu
closed
5 years ago
0
Specify region and AZ in config
#29
gwaybio
closed
5 years ago
1
Mounting AWS Volumes in Config
#28
gwaybio
closed
2 years ago
5
Specify Virginia as Region
#27
gwaybio
closed
5 years ago
0
skipping cleanup flag so travis doesnt wipe book
#26
gwaybio
closed
5 years ago
0
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