search

cytoscape / cyREST

Core App: REST API module for Cytoscape
https://github.com/cytoscape/cyREST/wiki
MIT License
30 stars 13 forks source link

Loading ontologies #75

Closed dotasek closed 6 years ago

dotasek commented 6 years ago

There isn't a means by which to import ontologies via CyREST.

The steps to achieve this via the GUI are outlined here: http://manual.cytoscape.org/en/stable/Ontology_and_Annotation_Import.html

However, all the relevant TaskFactories are in org.cytoscape.tableimport.internal, and are not available, and what could have been a relevant CyAction is commented out in abcaf57d095a1be7316681628d46973d6f63e626, possibly for very good reasons.

Making ontology loading part of the Cytoscape API needs to happen before this is addressed.

dotasek commented 6 years ago

As pointed out by @bdemchak, the support for this in Cytoscape is now gone completely, so shouldn't be an issue at all.