cytoscape / cyREST

Core App: REST API module for Cytoscape
https://github.com/cytoscape/cyREST/wiki
MIT License
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cyREST

Language-agnostic RESTful API for Cytoscape

Build Status Coverage Status


Citation

We need your support to make this project sustainable. Please cite the following paper when you use cyREST in your projects:

Ono, Keiichiro, et al. CyREST: Turbocharging Cytoscape Access for External Tools via a RESTful API. F1000Research 4 (2015).

Introduction

Important: Now cyREST is a Core App

From Cytoscape 3.3.0, cyREST is a Core App:

What is cyREST?

An app to control Cytoscape from RStudio, Jupyter Notebook, Node.js or other programming languages.

System Requirements

Documentation

For Developers and Maintainers

Build instructions and notes are included in the Developers Guide

Problems or Feature Requests?

Please send your feature requests to our mailing list.

Please report the problems to our issue tracker:

And of course, pull requests are always welcome!

License


© 2014-2016 Cytoscape Consortium.

Developed and maintained by Keiichiro Ono, UCSD Trey Ideker Lab.

Note to repository maintainers: Please *DO NOT* move this page ... the Cytoscape Automation paper refers directly to it.