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cytoscape / idmapper

Identifier mapping
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Failed to map Ensembl->SGD for galFiltered; HTTP 504 error #22

Closed AlexanderPico closed 7 years ago

AlexanderPico commented 7 years ago
  1. Opened galFiltered
  2. Right-clicked on name column
  3. Select Map column
  4. Guess was wrong
  5. Set Yeast and Ensembl
  6. Looooong wait then Message: Failed to map any...

504 Error Thrown:

java.io.IOException: HTTP error code : 504 at org.cytoscape.idmapper.internal.BridgeDbIdMapper.post(BridgeDbIdMapper.java:216) at org.cytoscape.idmapper.internal.BridgeDbIdMapper.runQuery(BridgeDbIdMapper.java:247) at org.cytoscape.idmapper.internal.BridgeDbIdMapper.map(BridgeDbIdMapper.java:86) at org.cytoscape.idmapper.task.ColumnMappingTask.run(ColumnMappingTask.java:214) at org.cytoscape.work.internal.task.JDialogTaskManager$TaskRunnable.innerRun(JDialogTaskManager.java:326) at org.cytoscape.work.internal.task.JDialogTaskManager$TaskRunnable.run(JDialogTaskManager.java:355) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745)

AlexanderPico commented 7 years ago

Confirmed that http://webservice.bridgedb.org was up and running. Not sure why a 504 timeout was returned...

AlexanderPico commented 7 years ago

Works from Gladstone today, no problem. Let's both test again from home.

khanspers commented 7 years ago

Maybe related: Running BridgeDb app using webservice.bridgedb.org/Human is problematic. Target ID Type (in destination type section) is blank.

AdamStuart commented 7 years ago

CNR