cytoscape / idmapper

Identifier mapping
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identifier-mapping

idmapper

BridgeDB based Identifier mapping

Version 3.6.5 - remove KEGG from MappingSource

Version 3.6.4 - added https support

This is a Cytoscape app that allows identifier mapping on tables. Once this app is installed, the table browser will respond to a right click on the column header with a pop-up menu containing the item Map Column...

A dialog is shown to gather the information about the species, and which columns you want to map From (the source) and To (the target). By default, multiple return values will be simplified to the first in the list, but turning off the Force Single checkbox will maintain all returned IDs.

Once the dialog is confirmed, a new column will be added to the Node Table containing the mapped identifiers.

This version adds support for the command dialog and CyREST access.

'{
"columnName": "name",
"forceSingle": "true",
"mapFrom": "HGNC",
"mapTo": "Ensembl",
"network": "A",
"table": "default node",
"species": "Human (Homo sapiens)"
}'