cytoscape py4cytoscape issues

cytoscape / py4cytoscape

Python library for calling Cytoscape Automation via CyREST

https://Py4Cytoscape.readthedocs.io

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issues

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string protein query gives errors when there are too many proteins

#137 mehmetdirenc opened 3 weeks ago
6
include how to add py4cytoscape on msys2

#136 Kreijstal closed 1 month ago
1
Is there a way to even export the attribute (e.g., curveness)of the edge from a cytoscape console to a data frame

#135 gmhhope opened 2 months ago
5
4.B.4 - powershell.exe adds a value under HKCU:\Software\Classes\ms-settings\shell\open\command via New-Item and New-ItemProperty

#134 CHRISTENLYNN opened 3 months ago
1
1.9.0 changes to merge into Master

#133 bdemchak closed 3 months ago
0
create_column_filter error with base_url handling

#132 SebNik opened 3 months ago
5
add_image_annotation only works https

#131 carissableker opened 4 months ago
1
Delay needed after layout_network in some cases

#130 nilsoberg opened 7 months ago
6
Bump jinja2 from 3.0.3 to 3.1.3 in /doc

#129 dependabot[bot] opened 7 months ago
0
importing NNF files?

#128 AthinaGav closed 7 months ago
2
`create_network_from_data_frames` too long

#127 cfz1998 opened 8 months ago
0
Group attribute layout with certain ordering of the members?

#126 gmhhope opened 8 months ago
3
Add set_node_label_position_default

#125 bdemchak closed 10 months ago
1
Add rotation and scaling functions to layout.py

#124 bdemchak closed 8 months ago
1
Implement rotation et al in layouts.py

#123 bdemchak closed 10 months ago
0
In version check, remove "-SNAPSHOT" when comparing versions

#122 bdemchak closed 10 months ago
2
Is it more pythonic way to provide an option to load JSON file instead of table to opt out `load_table_data`

#121 gmhhope closed 8 months ago
2
Embed image in nodes automation by py4cytoscape

#120 gmhhope closed 2 months ago
14
Run notebook container side-by-side with cytoscape in docker servers.

#119 gmhhope closed 8 months ago
18
Options to automate Node layout tools

#118 gmhhope closed 11 months ago
4
Clear the label rotation bypass

#117 gmhhope closed 11 months ago
1
A general question, can cytoscape render markdown text format?

#116 gmhhope closed 12 months ago
5
How to set what attribute to use for attribute-circle layout ?

#115 gmhhope closed 12 months ago
6
style bypasses for node width and node height change current style to 'default'

#114 carissableker opened 1 year ago
6
Editing base_url leads to cyrest_get errors

#113 jackhart591 closed 1 year ago
3
change python-igraph to igraph

#112 szhorvat closed 1 year ago
2
How to set the label rotation bypass and if that can be copied to another network?

#111 gmhhope closed 12 months ago
13
Figure export to PDF cannot fit the whole graph

#110 gmhhope closed 1 year ago
2
How to apply the node positions back to a new graph?

#109 gmhhope closed 1 year ago
7
Cannot handle list in `create_network_from_cytoscapejs`

#108 gmhhope closed 1 year ago
1
List with float throws exception when sending pandas datatable

#107 ObT1337 closed 1 year ago
6
Revert "Properly pass base_url when validating style values."

#106 bdemchak closed 1 year ago
0
Properly pass base_url when validating style values.

#105 nilsoberg closed 1 year ago
0
Set size of window/exported image

#104 nilsoberg closed 1 year ago
3
Request py4cytoscape version of radial label automation from RCy3

#103 gmhhope closed 1 year ago
3
Delay needed at end of add_to_group()

#102 bdemchak opened 1 year ago
0
Delay for commands_api and cyrest_api

#101 bdemchak opened 1 year ago
0
load_table_data changes the table

#100 carissableker opened 1 year ago
1
select_nodes fails with comma in node name

#99 carissableker closed 1 year ago
1
get_table_columns does not get all columns

#98 kozo2 opened 1 year ago
9
FutureWarning: in py4cytoscape\tables.py:502:

#97 kozo2 closed 1 year ago
2
Add selectEdgesAdjacentToNodes() per RCy3

#96 bdemchak closed 1 year ago
1
Customize the path of the detailed log file

#95 agitter closed 1 year ago
6
Remove n^2 loops

#94 bdemchak opened 2 years ago
0
Bottleneck in `load_table_data`

#93 ConsueTerra closed 1 year ago
5
Rendered image appears as a single dot for very large networks

#92 nilsoberg opened 2 years ago
4
Nodes not colored when using large network

#91 nilsoberg opened 2 years ago
2
Zoom parameter has no effect in export_image

#90 nilsoberg closed 1 year ago
4
Take advantage of v10 CyREST export image functions and parameters

#89 bdemchak closed 1 year ago
0
Connection to Cytoscape sometimes fails

#88 bdemchak closed 2 years ago
3