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cytoscape
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py4cytoscape
Python library for calling Cytoscape Automation via CyREST
https://Py4Cytoscape.readthedocs.io
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p4c.map_visual_properties(...) with argument "EDGE_TARGET_ARROW_SHAPE" ignores `base_url`.
#147
stephanmg
closed
5 days ago
12
How to export high dpi pictures with export_image and cytoscape v3.10?
#146
matthiaskoenig
closed
3 weeks ago
3
set_node_position_bypass does not support z_locations
#145
matthiaskoenig
opened
3 weeks ago
4
How to set node x and y position?
#144
matthiaskoenig
opened
4 weeks ago
12
Fix Key Type Conflict in `item_name_to_suid_list` Dictionary
#143
GeneCodeSavvy
closed
1 month ago
2
node_name_to_node_suid() does not accept node name that is also a number
#142
bdemchak
closed
1 month ago
4
py4cytoscape_utils changes
#141
GeneCodeSavvy
closed
2 months ago
2
Revert "py4cytoscape_utils changes"
#140
bdemchak
closed
2 months ago
0
py4cytoscape_utils changes
#139
GeneCodeSavvy
closed
2 months ago
4
gen_node_color_map does not set the correct MAX value for a continuous mapping
#138
rpillich
opened
2 months ago
6
string protein query gives errors when there are too many proteins
#137
mehmetdirenc
opened
3 months ago
16
include how to add py4cytoscape on msys2
#136
Kreijstal
closed
4 months ago
1
Is there a way to even export the attribute (e.g., curveness)of the edge from a cytoscape console to a data frame
#135
gmhhope
closed
2 months ago
5
4.B.4 - powershell.exe adds a value under HKCU:\Software\Classes\ms-settings\shell\open\command via New-Item and New-ItemProperty
#134
CHRISTENLYNN
opened
6 months ago
1
1.9.0 changes to merge into Master
#133
bdemchak
closed
6 months ago
0
create_column_filter error with base_url handling
#132
NiklasAbraham
opened
6 months ago
5
add_image_annotation only works https
#131
carissableker
opened
7 months ago
1
Delay needed after layout_network in some cases
#130
nilsoberg
opened
10 months ago
6
Bump jinja2 from 3.0.3 to 3.1.3 in /doc
#129
dependabot[bot]
opened
10 months ago
0
importing NNF files?
#128
AthinaGav
closed
10 months ago
2
`create_network_from_data_frames` too long
#127
cfz1998
opened
11 months ago
0
Group attribute layout with certain ordering of the members?
#126
gmhhope
opened
11 months ago
4
Add set_node_label_position_default
#125
bdemchak
closed
1 year ago
1
Add rotation and scaling functions to layout.py
#124
bdemchak
closed
11 months ago
1
Implement rotation et al in layouts.py
#123
bdemchak
closed
1 year ago
0
In version check, remove "-SNAPSHOT" when comparing versions
#122
bdemchak
closed
1 year ago
2
Is it more pythonic way to provide an option to load JSON file instead of table to opt out `load_table_data`
#121
gmhhope
closed
11 months ago
2
Embed image in nodes automation by py4cytoscape
#120
gmhhope
closed
5 months ago
14
Run notebook container side-by-side with cytoscape in docker servers.
#119
gmhhope
closed
11 months ago
18
Options to automate Node layout tools
#118
gmhhope
closed
1 year ago
4
Clear the label rotation bypass
#117
gmhhope
closed
1 year ago
1
A general question, can cytoscape render markdown text format?
#116
gmhhope
closed
1 year ago
5
How to set what attribute to use for attribute-circle layout ?
#115
gmhhope
closed
1 year ago
6
style bypasses for node width and node height change current style to 'default'
#114
carissableker
opened
1 year ago
6
Editing base_url leads to cyrest_get errors
#113
jackhart591
closed
1 year ago
3
change python-igraph to igraph
#112
szhorvat
closed
1 year ago
2
How to set the label rotation bypass and if that can be copied to another network?
#111
gmhhope
closed
1 year ago
13
Figure export to PDF cannot fit the whole graph
#110
gmhhope
closed
1 year ago
2
How to apply the node positions back to a new graph?
#109
gmhhope
closed
1 year ago
7
Cannot handle list in `create_network_from_cytoscapejs`
#108
gmhhope
closed
1 year ago
1
List with float throws exception when sending pandas datatable
#107
ObT1337
closed
1 year ago
6
Revert "Properly pass base_url when validating style values."
#106
bdemchak
closed
1 year ago
0
Properly pass base_url when validating style values.
#105
nilsoberg
closed
1 year ago
0
Set size of window/exported image
#104
nilsoberg
closed
1 year ago
3
Request py4cytoscape version of radial label automation from RCy3
#103
gmhhope
closed
1 year ago
3
Delay needed at end of add_to_group()
#102
bdemchak
opened
1 year ago
0
Delay for commands_api and cyrest_api
#101
bdemchak
opened
1 year ago
0
load_table_data changes the table
#100
carissableker
opened
1 year ago
1
select_nodes fails with comma in node name
#99
carissableker
closed
1 year ago
1
get_table_columns does not get all columns
#98
kozo2
opened
1 year ago
9
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