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czbiohub-sf
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iohub
Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
https://czbiohub-sf.github.io/iohub/
BSD 3-Clause "New" or "Revised" License
29
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7
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test_combine_fovs_to_hcs fails
#255
ieivanov
opened
4 days ago
0
Fix well naming case mismatch bug
#254
ieivanov
closed
2 days ago
1
`create_position` fails when inconsistent row/column capitalization is used
#253
ieivanov
opened
4 days ago
1
Fixing tests for process_single_position_setup()
#252
edyoshikun
closed
2 days ago
0
Test error after merging #234
#251
ziw-liu
closed
2 days ago
3
`docs` build failing on `main`
#250
talonchandler
closed
1 week ago
1
`Position` should be a subclass of `BaseFOV`
#249
talonchandler
opened
1 week ago
0
adding datastore size to iohub info
#248
edyoshikun
opened
1 week ago
3
get the zarr dataset size with iohub info verbose
#247
edyoshikun
opened
1 week ago
0
Limit action runners
#246
ziw-liu
opened
3 weeks ago
1
Export `ImageArray` from the `ngff` module
#245
edyoshikun
closed
3 weeks ago
0
Use annotation instead of field for tagged union
#244
ziw-liu
closed
4 weeks ago
1
Release a pypi version with the pydantic v2 fixes
#243
edyoshikun
closed
3 weeks ago
5
adding conversion to tensorstore
#242
edyoshikun
opened
1 month ago
3
Error for segmentation
#241
kfweng0512
closed
3 weeks ago
6
Error reading MM data from DragonFly
#240
Soorya19Pradeep
closed
3 weeks ago
3
Multi-version gallery build fails
#239
ziw-liu
opened
1 month ago
0
Fixing pyramid scaling factor
#238
JoOkuma
closed
1 month ago
0
Support falcon datasets with latest micromanager
#237
talonchandler
opened
1 month ago
0
CLI or similar to change the channel names.
#236
edyoshikun
opened
2 months ago
1
Direct porting `create_empty_zarr` to iohub
#235
ieivanov
closed
2 months ago
0
Porting `create_empty_zarr` to iohub
#234
edyoshikun
closed
1 week ago
4
Refactor NGFF module and migrate to Pydantic v2
#233
ziw-liu
closed
2 months ago
4
`rename-wells` CLI utility
#232
josephschull
closed
1 day ago
6
Rename wells functionality, fixed style errors
#231
josephschull
closed
2 months ago
0
Rename_wells initial implementation
#230
josephschull
closed
3 months ago
0
Addition of cropping.py
#229
alishbaimran
opened
3 months ago
3
`set-scale` utility
#228
aaronalvarezcz
closed
1 week ago
7
Fix docs switcher path
#227
ziw-liu
closed
3 months ago
0
TypeError: ImageArray.__init__() got an unexpected keyword argument 'store'
#226
ieivanov
opened
3 months ago
2
Fix README examples link
#225
talonchandler
closed
3 months ago
1
Add Y5 to orange display color group
#224
ziw-liu
closed
3 months ago
0
UAPI docs update
#223
ziw-liu
closed
3 months ago
2
Unified API for Micro-manager readers
#222
ieivanov
closed
3 months ago
6
DaXi dataset reader implementation
#221
JoOkuma
opened
4 months ago
0
Modify warning
#220
ieivanov
closed
3 months ago
2
Add CITATION.cff
#219
ziw-liu
closed
4 months ago
3
Fix converter for ndtiff using multicam
#218
edyoshikun
opened
5 months ago
2
Allow undefined pixel size for NDTiff
#217
ziw-liu
closed
2 months ago
0
Add far red color code
#216
ziw-liu
closed
3 months ago
2
Fix bug reading dragonfly acquisitions
#215
ieivanov
closed
5 months ago
0
Fix bug determining number of rows and cols
#214
ieivanov
closed
6 months ago
0
TIFF UAPI TODOs
#213
ziw-liu
opened
7 months ago
0
Add TIFF examples
#212
ziw-liu
opened
7 months ago
1
Sort keys in metadata .json files
#211
ieivanov
closed
5 months ago
5
CLI to update metadata of zarr stores
#210
ieivanov
opened
7 months ago
4
support ome-ngff on s3
#209
d-v-b
opened
7 months ago
5
pin tifffile to a newer version to allow unpinning of ome-zarr.
#208
ilan-theodoro
closed
6 months ago
5
unpin zarr versions
#207
JoOkuma
closed
3 months ago
1
iohub verbose fails if hcs plate has only one position
#206
edyoshikun
closed
9 months ago
4
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