napari-iohub

OME-Zarr viewer plugin for napari with iohub as the I/O backend.

Widgets are provided for different visualization use cases:

Usage documentation can be found in the wiki.

This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Installation

First, install napari.

You can then install napari-iohub via pip:

git clone https://github.com/czbiohub/napari-iohub.git
pip install ./napari-iohub

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

Distributed under the terms of the BSD-3 license, "napari-iohub" is free and open source software.

If you encounter any problems, please file an issue along with a detailed description.

Designed for the intracellular dashboard project by the Computational Microscopy team at the Chan Zuckerberg Biohub SF.