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dan-landau / IronThrone-GoT

processes GoT amplicon data and generates a table of metrics
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New Option Parameters not available in Version 2.1 #7

Open petervangalen opened 3 years ago

petervangalen commented 3 years ago

Hi, I am trying to use new option parameters for Version 2.1, especially --target-lines or -tl, but get the error "Unknown option: tl". I also found that the executable IronThrone-GoT appears to be unchanged from the first software version. Thanks!

dan-landau commented 3 years ago

The updated pipeline functions as a wrapper around the original script. In addition to placing the original IronThrone-GoT script in your working directory, also add one of the scripts from the Parallelized_UMI_Collapse folder based on your OS and call that second script directly using the options parameters you mentioned, as well as any from the original script.

petervangalen commented 3 years ago

Ok thank you!