STRchive

Short Tandem Repeat disease loci resource

Contributors: Harriet Dashnow, Laurel Hiatt

URL: http://strchive.org/

STRchive by Harriet Dashnow is licensed under CC BY 4.0

Contributing to STRchive

If you notice an error, omission or update, feel free to leave a comment or create a pull request.

Edit the STRchive locus data

Edit either data/STRchive-database.json or data/STRchive-database.csv (not both!)

Run python scripts/update_database.py
This will overwrite the older file with your changes

Update plots

plots.R

Update genotyping catalogs

python scripts/make_catalog.py -g T2T -f TRGT data/STRchive-database.csv data/T2T-CHM13.STRchive-disease-loci.TRGT.bed
python scripts/make_catalog.py -g hg38 -f TRGT data/STRchive-database.csv data/hg38.STRchive-disease-loci.TRGT.bed
python scripts/make_catalog.py -g hg19 -f TRGT data/STRchive-database.csv data/hg19.STRchive-disease-loci.TRGT.bed