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datacarpentry
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wrangling-genomics
Data Wrangling and Processing for Genomics
https://datacarpentry.org/wrangling-genomics/
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Update Workflows to Version 0.16.6
#262
carpentries-bot
opened
1 week ago
1
Using -p unnecessarily in all the mkdirs
#261
sstevens2
opened
1 month ago
0
Fix typo
#260
Parcelli
closed
2 months ago
1
Update Workflows to Version 0.16.5
#259
carpentries-bot
closed
2 months ago
1
02-quality-control: clarification for transfer data from AWS to local desktop
#258
youyaqi
opened
2 months ago
0
02-quality-control: clarification for paired-end data
#257
youyaqi
opened
2 months ago
0
Update link target for setup instructions
#256
tobyhodges
closed
2 months ago
2
Create docs directory
#255
ErinBecker
closed
2 months ago
2
fix file path
#254
ErinBecker
opened
2 months ago
1
Fixed typo in 05-automation.md
#253
asntech
closed
2 months ago
2
Step 3: Filter and report the incorrect directory in hightlight section
#252
Hanson19
closed
2 months ago
2
Fix broken links to setup page
#251
murraycadzow
closed
2 months ago
2
for loop not saving unzipped files
#250
Luke-Zondagh
closed
10 months ago
1
Update Workflows to Version 0.16.2
#249
carpentries-bot
closed
2 months ago
2
Update slack links
#248
froggleston
closed
2 months ago
2
Variant Calling testing cmds should match script
#247
sstevens2
opened
1 year ago
0
Update software versions
#246
bkmgit
opened
1 year ago
0
fix: links in CONTRIBUTING.md
#245
gcroci2
closed
2 months ago
2
Clarify issues links in CONTRIBUTING.md
#244
JCSzamosi
opened
1 year ago
0
Links need to be fixed in CONTRIBUTING.md
#243
tobyhodges
opened
1 year ago
0
[markdown] fix ZSH callout
#242
zkamvar
closed
1 year ago
1
update zenodo json for lesson release
#241
tobyhodges
closed
1 year ago
1
Transition To Workbench in May
#240
zkamvar
closed
9 months ago
9
Update to final version of styles lesson template
#239
tobyhodges
closed
1 year ago
0
Add pro tip on reducing disk I/O
#238
djhshih
closed
1 year ago
1
Grammatical / typo errors in Trimming and Filtering
#237
anniewest
opened
1 year ago
0
Add alt text for images included in the lesson for improved accessibility
#236
mellamosummer
opened
1 year ago
0
vhmcck/wrangling genomics test branch
#235
vhmcck
closed
1 year ago
1
trimmomatic PE only runs as trimmomaticPE
#234
CronicSloth
closed
1 year ago
1
Update index.md
#233
robertmand
closed
1 year ago
1
Consider updating the trimming tool to something a bit friendlier
#232
JCSzamosi
opened
2 years ago
4
Update index.md
#231
mamanambiya
closed
1 year ago
1
Need jump lists (anchors) for headings
#230
annajiat
opened
2 years ago
0
Incorrect directory (bcf) under Step 3 in variant calling part
#229
waydeveldman
closed
2 years ago
2
Update 04-variant_calling.md
#228
schuyler-smith
closed
2 years ago
2
Minor spellcheck in 03-trimming.md
#227
klemensnoga
closed
2 years ago
0
Change the vcf output from bcf to vcf
#226
DininduSenanayake
closed
2 years ago
0
change the output directory for vcf to vcf
#225
DininduSenanayake
closed
2 years ago
0
Lesson Contribution: Assessing Read Quality
#224
Talishask
opened
3 years ago
1
change SNP to SNV, remove contractions and make headings sentence case
#223
ailithewing
closed
2 years ago
0
Added a note on wildcards in zsh
#222
SRSteinkamp
closed
2 years ago
3
Where does the build recipe for the 'dataCgen-qc' AMI live?
#221
willfurnass
opened
3 years ago
0
Assessing Read Quality: Improve the visualisation of Phred Quality Scores
#220
theheking
opened
3 years ago
1
Adapt trimmomatic command
#219
larahurban
opened
3 years ago
0
Update 03-trimming.md
#218
jsarro13
closed
2 years ago
0
Use of SRA Explorer to Download FastQC Files ?
#217
jcjimbo
opened
3 years ago
0
Error on scp with zsh
#216
ErinBecker
closed
2 years ago
1
wrangling-genomics/04-variant_calling: Viewing with IGV - typo
#215
kalanir
closed
2 months ago
2
Explain filtering variants and show its effects with the TS/TV ratio.
#214
rcastelo
closed
1 year ago
4
Add the use of MultiQC to combine fastqc file in section 02-quality-control
#213
ggrimes
opened
4 years ago
0
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