datacarpentry wrangling-genomics issues

datacarpentry / wrangling-genomics

Data Wrangling and Processing for Genomics

https://datacarpentry.org/wrangling-genomics/

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issues

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Update Workflows to Version 0.16.6

#262 carpentries-bot opened 2 months ago
1
Using -p unnecessarily in all the mkdirs

#261 sstevens2 opened 2 months ago
0
Fix typo

#260 Parcelli closed 3 months ago
1
Update Workflows to Version 0.16.5

#259 carpentries-bot closed 3 months ago
1
02-quality-control: clarification for transfer data from AWS to local desktop

#258 youyaqi opened 4 months ago
0
02-quality-control: clarification for paired-end data

#257 youyaqi opened 4 months ago
0
Update link target for setup instructions

#256 tobyhodges closed 3 months ago
2
Create docs directory

#255 ErinBecker closed 3 months ago
2
fix file path

#254 ErinBecker opened 4 months ago
1
Fixed typo in 05-automation.md

#253 asntech closed 4 months ago
2
Step 3: Filter and report the incorrect directory in hightlight section

#252 Hanson19 closed 4 months ago
2
Fix broken links to setup page

#251 murraycadzow closed 4 months ago
2
for loop not saving unzipped files

#250 Luke-Zondagh closed 1 year ago
1
Update Workflows to Version 0.16.2

#249 carpentries-bot closed 4 months ago
2
Update slack links

#248 froggleston closed 4 months ago
2
Variant Calling testing cmds should match script

#247 sstevens2 opened 1 year ago
0
Update software versions

#246 bkmgit opened 1 year ago
0
fix: links in CONTRIBUTING.md

#245 gcroci2 closed 4 months ago
2
Clarify issues links in CONTRIBUTING.md

#244 JCSzamosi opened 1 year ago
0
Links need to be fixed in CONTRIBUTING.md

#243 tobyhodges opened 1 year ago
0
[markdown] fix ZSH callout

#242 zkamvar closed 1 year ago
1
update zenodo json for lesson release

#241 tobyhodges closed 1 year ago
1
Transition To Workbench in May

#240 zkamvar closed 11 months ago
9
Update to final version of styles lesson template

#239 tobyhodges closed 1 year ago
0
Add pro tip on reducing disk I/O

#238 djhshih closed 1 year ago
1
Grammatical / typo errors in Trimming and Filtering

#237 anniewest opened 1 year ago
0
Add alt text for images included in the lesson for improved accessibility

#236 mellamosummer opened 1 year ago
0
vhmcck/wrangling genomics test branch

#235 vhmcck closed 1 year ago
1
trimmomatic PE only runs as trimmomaticPE

#234 CronicSloth closed 1 year ago
1
Update index.md

#233 robertmand closed 1 year ago
1
Consider updating the trimming tool to something a bit friendlier

#232 JCSzamosi opened 2 years ago
4
Update index.md

#231 mamanambiya closed 1 year ago
1
Need jump lists (anchors) for headings

#230 annajiat opened 2 years ago
0
Incorrect directory (bcf) under Step 3 in variant calling part

#229 waydeveldman closed 2 years ago
2
Update 04-variant_calling.md

#228 schuyler-smith closed 2 years ago
2
Minor spellcheck in 03-trimming.md

#227 klemensnoga closed 3 years ago
0
Change the vcf output from bcf to vcf

#226 DininduSenanayake closed 3 years ago
0
change the output directory for vcf to vcf

#225 DininduSenanayake closed 3 years ago
0
Lesson Contribution: Assessing Read Quality

#224 Talishask opened 3 years ago
1
change SNP to SNV, remove contractions and make headings sentence case

#223 ailithewing closed 3 years ago
0
Added a note on wildcards in zsh

#222 SRSteinkamp closed 3 years ago
3
Where does the build recipe for the 'dataCgen-qc' AMI live?

#221 willfurnass opened 3 years ago
0
Assessing Read Quality: Improve the visualisation of Phred Quality Scores

#220 theheking opened 3 years ago
1
Adapt trimmomatic command

#219 larahurban opened 3 years ago
0
Update 03-trimming.md

#218 jsarro13 closed 3 years ago
0
Use of SRA Explorer to Download FastQC Files ?

#217 jcjimbo opened 4 years ago
0
Error on scp with zsh

#216 ErinBecker closed 3 years ago
1
wrangling-genomics/04-variant_calling: Viewing with IGV - typo

#215 kalanir closed 3 months ago
2
Explain filtering variants and show its effects with the TS/TV ratio.

#214 rcastelo closed 1 year ago
4
Add the use of MultiQC to combine fastqc file in section 02-quality-control

#213 ggrimes opened 4 years ago
0