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datalad
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datalad-ukbiobank
Resources for working with UKBiobank as a DataLad dataset
MIT License
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Document how pre-downloaded content can be used as a permanent data source
#51
mih
opened
4 years ago
0
Prevent inclusion of build helpers in binary packages
#50
mih
closed
4 years ago
0
 Rename build helper location to avoid conflict with datalad itself
#49
mih
closed
4 years ago
1
Apply package setup updates from the revised extension-template
#48
mih
closed
4 years ago
2
hardlink issue with datalad, datalad-ukbiobank (likely a git-annex issue)
#57
satra
closed
3 years ago
6
Label data records properly
#47
mih
closed
4 years ago
1
ukb-update --drop {extracted|archives}
#46
mih
closed
4 years ago
1
Rename `update --force-update` -> `update --force`
#45
mih
closed
4 years ago
1
Ability to drop files from annex
#44
mih
closed
4 years ago
0
Rename `update --force-update` -> `update --force`
#43
mih
closed
4 years ago
0
Maintain BIDS and native dataset layout in parallel
#42
mih
closed
4 years ago
2
More complete unit tests
#41
mih
closed
4 years ago
1
Consolidate BIDS mapping code into a single invokation per update
#40
mih
closed
4 years ago
2
Support interactive entry of UKB access key file location
#39
mih
closed
4 years ago
1
Have BIDS in non-BIDS layout in different branch
#38
mih
closed
4 years ago
0
add all fields but fetch some
#37
satra
opened
4 years ago
1
Release v0.3
#36
mih
closed
4 years ago
3
Basic setup to mock UKB updates
#35
mih
closed
4 years ago
1
Some initial unittests
#34
mih
closed
4 years ago
1
Add unittests
#33
mih
closed
4 years ago
2
Avoid leakage of absolute paths into the ukbfetch run record
#32
mih
closed
4 years ago
2
Change non-BIDS dataset layout
#31
mih
closed
4 years ago
23
WIP: add freesurfer recon fields
#30
satra
closed
2 years ago
8
Add data record subdirectory for any ZIP file content in non-BIDS mode
#29
mih
closed
4 years ago
0
Support for data types not downloaded as zip files
#28
mih
closed
4 years ago
1
Add example replacement for ukbfetch
#27
mih
closed
4 years ago
1
creating datalad-ukb dataset in a non empty directory
#26
djarecka
closed
4 years ago
12
BIDS validation issues: Incorrect slice timing values?
#25
adswa
opened
4 years ago
5
BIDS validation issues: Unsupported BEP004?
#24
adswa
opened
4 years ago
1
BIDS validation issues: Non-compliant non-bids directory
#23
adswa
opened
4 years ago
1
support for data types not downloaded as zip files
#22
loj
closed
4 years ago
7
Release 0.2 to PyPi (as well)
#21
mih
closed
4 years ago
1
Support multi-instance data records
#20
mih
closed
4 years ago
3
Do not fail on re-init due to deleted .ukbbatch file
#19
mih
closed
4 years ago
0
adding new DATARECORD-IDs to the dataset
#18
djarecka
closed
4 years ago
3
Overwrite error when downloading two data instances of one participant with ukb-update
#17
Hoda1394
closed
4 years ago
12
IDs used by datalad-ukb
#16
djarecka
closed
4 years ago
7
Rename to datalad-ukbiobank
#15
yarikoptic
closed
4 years ago
1
modify swi file names according to BEP004
#14
loj
closed
4 years ago
0
BIDS filename mapping
#13
mih
closed
4 years ago
1
ukb-update command
#12
mih
closed
4 years ago
1
ukb-init command
#11
mih
closed
4 years ago
0
Skeleton of a DataLad extension
#10
mih
closed
4 years ago
0
added BIDS conversion scripts as submodule
#9
AlexandreHutton
closed
4 years ago
1
download of 1000 subject subset with condor
#8
loj
closed
4 years ago
5
Initial draft of a set of scripts to create DataLad datasets for individual participants
#7
mih
closed
4 years ago
4
UKBB possible steps for row data laid out by Michael
#6
jbpoline
closed
4 years ago
1
Update Readme.md
#5
jbpoline
closed
4 years ago
0
(Super)dataset entry points
#4
mih
closed
3 years ago
1
Proposal: per participant raw data tracking
#3
mih
closed
4 years ago
1
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