The current setup for extract only supports extracting found sessions linearly. Now functionality has been added to moseq2-extract to put together commands for extracting sessions parallelly with slurm.
https://github.com/dattalab/moseq2-app/issues/148
Issue being fixed or feature implemented
The current setup for extract only supports extracting found sessions linearly. Now functionality has been added to moseq2-extract to put together commands for extracting sessions parallelly with slurm. https://github.com/dattalab/moseq2-app/issues/148
What was done?
Adding Slurm support for both GUI and CLI. For CLI, I modified batch-extract CLI function. Related PR in moseq2-app https://github.com/dattalab/moseq2-app/pull/172
How Has This Been Tested?
CI and locally.
Breaking Changes
extract and batch-extract has cluster-type as an option and default to 'local'.
Checklist: