MoSeq2-Viz: Visualization toolbox for MoSeq2
Documentation: MoSeq2 Wiki
You can find more information about MoSeq Pipeline, installation, step-by-step instructions, documentation for Command Line Interface(CLI), tutorials etc in MoSeq2 Wiki.
You can run moseq2-viz --version to check the current version and moseq2-viz --help to see all the commands.
Usage: moseq2-viz [OPTIONS] COMMAND [ARGS]...
Options:
--version Show the version and exit. [default: False]
--help Show this message and exit. [default: False]
Commands:
add-group Change group name in index file given a...
copy-h5-metadata-to-yaml Copies metadata within an h5 file to a...
get-best-model Returns the model with the closest median...
make-crowd-movies Writes movies of overlaid examples of the...
plot-group-position-heatmaps Plots position heatmaps for each group in...
plot-scalar-summary Plots a scalar summary of the index file...
plot-stats Plots syllable usages with different...
plot-transition-graph Plots the transition graph depicting the...
plot-verbose-position-heatmaps Plots a position heatmap for each session...Community Support and Contributing
- Please join
to post questions and interactive with MoSeq developers and users. - If you encounter bugs, errors or issues, please submit a Bug report here. We encourage you to check out the troubleshooting and tips section and search your issues in the existing issues first.
- If you want to see certain features in MoSeq or you have new ideas, please submit a Feature request here.
- If you want to contribute to our codebases, please check out our Developer Guidelines.
- Please tell us what you think by filling out this user survey.
License
MoSeq is freely available for academic use under a license provided by Harvard University. Please refer to the license file for details. If you are interested in using MoSeq for commercial purposes please contact Bob Datta directly at srdatta@hms.harvard.edu, who will put you in touch with the appropriate people in the Harvard Technology Transfer office.