LibICS consists of two subpackages:
core provides general purpose data structures and I/O,tools contains a set of analysis functions.The full documentation can be found here.
Clone this repository:
git clone https://www.github.com/david-wei/libics.gitInstall the library:
pip install ./libicsLibraries providing extensions (or actual implementations) that not necessarily all users need have to be installed separately. This chapter gives an overview of these additional external dependencies.
| Library | Description | File types [read/write] | Installation |
|---|---|---|---|
| pymongo | MongoDB database | [r/w] Binary JSON files (.bson) | pip install pymongo |
| sif_reader | SIF file reader | [r] Singularity image files (.sif) | pip install git+https://github.com/fujii-team/sif_reader.git |