Great work on your pseudocode!! I was able to follow your logic and everything makes sense to me! I believe your algorithm does everything it is supposed to do.
I really like your "softclip_corrector" function. I think it helps with the flow of the code to have that separate from the main code chunk.
Something to think about ... if the read is on the minus strand, will you have to reverse complement the umi?
Hello!
Great work on your pseudocode!! I was able to follow your logic and everything makes sense to me! I believe your algorithm does everything it is supposed to do.
I really like your "softclip_corrector" function. I think it helps with the flow of the code to have that separate from the main code chunk.
Something to think about ... if the read is on the minus strand, will you have to reverse complement the umi?