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Aurora metadata portal
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Missing CNV data for two samples: A739_G09, A739_H10 #29

Closed chanur closed 4 years ago

chanur commented 4 years ago

Two normal samples one a NT and the other a NB have no CNV (A739_G09 and A739_H10) Doesn't make sense. Why? Because CNV is usually called using a matched normal or pooled normals Why only two normal samples don't have CNV again, need metadata

ropelews commented 4 years ago

Tom Maiden contacted Kyle in conjunction with the files below:

Kyle from Nationwide Children's confirms that it was intentional that the files were not there. The BAM files were about 500Mb in size and had little to no coverage, so we were unable to perform CNV analysis.

There were also two failures with the clonality analysis for patients AFE6 and AER2.

Please let me know if you need anything further from me.

Tom

MISSING file: A739_G09.merged.gene_cnv.csv MISSING file: A739_G09.modeled.png MISSING file: A739_G09.denoised.png MISSING file: A739_H10.merged.gene_cnv.csv MISSING file: A739_H10.modeled.png MISSING file: A739_H10.denoised.png

ropelews commented 4 years ago

Anish will remove from json.